Journal

Biophysical Journal

OpenAlex S98085912

Published here

122 counted works of 127 linked

YearTitleAcademicsSources
2026 BPS2026–Chemical interactions in polyethylene glycol-induced phase separation lead to an anomalous FRET response from a flexible linker-fluorescent protein crowding sensor Caitlin Davis GS
2025 BPS2025-Multispectral vibrational imaging for high-resolution tracking of live-cell metabolic processes related record Caitlin Davis GS
2025 Multispectral vibrational imaging for high-resolution tracking of live-cell metabolic processes related record Caitlin Davis GS
2024 Bayesian optimized unbiased complete clustering for single molecule localization microscopy Laura J. Kaufman GS
2024 Chemical interactions determine cellular stability and kinetics of small proteins Caitlin Davis GS
2024 Cold-and heat-denaturations of Yfh1 are oppositely affected in cells Caitlin Davis GS
2024 Connecting simulation and experiment of protein folding inside cells with fast relaxation imaging Caitlin Davis GS
2024 Folding of G-quadruplexes and i-motifs in the nucleus of living cells Caitlin Davis GS
2024 Insulin-resistant Huh-7 cells as a model for nonalcoholic fatty liver disease Caitlin Davis GS
2024 Label-free visualization of the cell cycle and mitosis Caitlin Davis GS
2024 Multispectral vibrational imaging for high resolution tracking of live cell metabolic processes Caitlin Davis GS
2024 Oleic acid differentially affects de novo lipogenesis and global lipid levels in hepatocytes Caitlin Davis GS
2024 Predicting relative populations of protein conformations without a physics engine using AlphaFold2 Brenda Rubenstein OA GS
2024 Stability vs. environmental sensitivity: The importance of protein surface charge adaptations Caitlin Davis GS
2024 Tardigrade CAHS hydrogels protect proteins through concentration-dependent mechanism Caitlin Davis GS
2024 The effect of histidine interruption position on RNA foci phase transition Caitlin Davis GS
2024 Water-protein interactions as a driver of phase separation, biology, and disease E. Chui-Ying Yan CV OA
2023 Lipid-driven interleaflet coupling of plasma membrane order regulates FcεRI signaling in mast cells Barbara A. Baird OA GS
2023 Mutations in a human kinase cause drug resistance by shifting conformational state distributions Brenda Rubenstein OA GS
2023 Probing regulatory mechanisms of the de novo DNA methyltransferase DNMT3A Brian Liau GS
2023 Structural Diversity of Photoswitchable Sphingolipids for Optodynamic Control of Lipid Microdomains Dirk Trauner CV OA GS
2022 A hairpin to duplex conversion underlies RNA foci phase transitions Caitlin Davis GS
2022 Coordination between multiple bacterial communities using potassium ion signaling Brenda Rubenstein OA GS
2022 Exploiting conformational transitions in protein kinases for the discovery of polyvalent inhibitors Brenda Rubenstein OA GS
2022 Graph neural networks for biochemistry that incorporate substructure Erik Thiede GS
2022 Heterogeneous strains in tissue suppress collagen degradation by collagenases David M. Chenoweth GS
2022 Multivalent interactions between molecular components involved in non-clathrin endocytosis drive protein phase separation Tobias Baumgart GS
2022 Programming xenon diffusion in maltose-binding protein Ivan J. Dmochowski OA GS
2022 RNA hairpin folding dynamics in a cell Caitlin Davis GS
2022 Spliceosomal SL1 RNA binding to U1-70K: gaurdian under stress Caitlin Davis GS
2021 Covalent Docking and Molecular Dynamics Simulations Reveal the Resistance-Granting Mutations A237R/K in TEM Beta-Lactamase Brenda Rubenstein OA GS
2021 Heterogeneously Strained Tissue Collagen Resists Collagenase Degradation where Strains are High related record David M. Chenoweth GS
2021 Linearly polarized excitation enhances signals from fluorescent voltage indicators Adam Cohen CV OA
2020 Bioelectrical signaling via domain wall migration Adam Cohen CV OA
2020 Effect of protein structure on evolution of cotranslational folding William M. Jacobs CV OA
2020 Heterogeneously Strained Tissue Collagen Resists Collagenase Degradation Where Strains are High David M. Chenoweth GS
2019 Coarse- Grained Simulations of Full-Length Integrin Activation Jaehyeok Jin CV OA GS
2019 Detection of Nav1.5 Conformational Change in Mammalian Cells Using the Noncanonical Amino Acid ANAP Virginia W. Cornish CV OA
2019 Molecular Dynamics Simulations of the Circadian Clock Protein Kaic Reveal Structural Insights into the Nucleotide Release and Circadian Timing Mechanisms Erik Thiede GS
2019 PIP2 reshapes membranes through asymmetric desorption Tobias Baumgart GS
2019 Polyphosphate initiates tau aggregation through intra- and intermolecular cross-linking Elizabeth Rhoades GS
2019 Proteins: Disorder, Folding, and Crowding Elizabeth Rhoades GS
2019 Self-Similar Dynamics of Nuclear Packing in the Early Drosophila Embryo Salvatore Torquato CV OA
2019 Spatial Segregation and Boundary Formation in Breast Cancer Aggregates Laura J. Kaufman GS
2018 Lipid-Gel Model of Biological Membranes Tobias Baumgart GS
2018 Using a FRET library with multiple probe pairs to drive monte carlo simulations of α-synuclein Elizabeth Rhoades; E. James Petersson GS
2018 Using a Large Ensemble FRET Library with Multiple Probe Pairs to Drive Monte Carlo Simulations of Disordered α-Synuclein Zahra Fakhraai CV OA GS
2017 Confocal rheology probes the structure and mechanics of collagen through the sol-gel transition Laura J. Kaufman GS
2017 Heterogeneous tau-tubulin complexes accelerate microtubule polymerization Elizabeth Rhoades GS
2017 Phase transitions in biological systems with many components William M. Jacobs CV OA
2017 Protein Sequence and Membrane Lipid Roles in the Activation Kinetics of Bovine and Human Rhodopsins E. Chui-Ying Yan CV OA
2016 Evaluating breast cancer cell morphology as a predictor of invasive capacity Laura J. Kaufman GS
2016 Membrane shape instability induced by protein crowding Tobias Baumgart GS
2016 Optogenetics: turning the microscope on its head Adam Cohen CV OA
2016 Structural Characterization and Statistical-Mechanical Model of Epidermal Patterns Salvatore Torquato CV OA
2016 Structure-based prediction of protein-folding transition paths William M. Jacobs CV OA
2016 The Formation of Amyloid Fibril on Two-Dimensional Surface Zahra Fakhraai OA GS
2015 Detailed Mechanism of Rapid Amyloid Fibril Self-Assembly Due to Surface Diffusion Zahra Fakhraai OA GS
2015 Regulation of membrane-shape transitions induced by I-BAR domains Tobias Baumgart GS
2015 Two-photon lifetime imaging of voltage indicating proteins as a probe of absolute membrane voltage Adam Cohen CV OA GS
2014 Collagen I self-assembly: revealing the developing structures that generate turbidity Laura J. Kaufman GS
2014 Imaging GFP-based reporters in neurons with multiwavelength optogenetic control Adam Cohen CV OA GS
2014 Isotropic 3D super-resolution imaging with a self-bending point-spread function Xiaowei Zhuang CV OA
2014 Spatially Defined EGF Receptor Activation Reveals an F-Actin-Dependent Phospho-Erk Signaling Complex Barbara A. Baird CV OA GS
2014 Temporal dynamics of microbial rhodopsin fluorescence reports absolute membrane voltage Adam Cohen CV OA GS
2014 The Covalent Trimethoprim Chemical Tag Facilitates Single Molecule Imaging with Organic Fluorophores Virginia W. Cornish CV OA
2013 A Metal Switch for Controlling the Activity of Molecular Motor Proteins related record Dean E. Wilcox OA GS
2013 Distinct Stages of Stimulated FcRI Receptor Clustering and Immobilization Are Identified through Superresolution Imaging Barbara A. Baird CV OA GS
2013 Two- Dimensional Macroscopic Protein Domains Induced by the Interplay between Lipid- Protein and Protein- Protein Interactions Ivan J. Dmochowski OA GS
2012 A Mobile Precursor Determines Amyloid-β Peptide Fibril Formation at the Liquid-Solid Interface Xiaoyang Zhu OA GS
2012 Nonlinear sorting, curvature generation, and crowding of endophilin N-BAR on tubular membranes Tobias Baumgart GS
2012 Sensing Membrane Stress with Near IR-Emissive Porphyrins related record Ivan J. Dmochowski OA GS
2012 Statistical deconvolution for super-resolution fluorescence Microscopy Xiaowei Zhuang CV OA GS
2012 The conformational ensembles of α-synuclein and tau: combining single-molecule FRET and simulations Elizabeth Rhoades GS
2011 An Array of Planar Apertures for Near-Field Fluorescence Correlation Spectroscopy Barbara A. Baird CV OA GS
2011 Response to Kang et al. Barbara A. Baird CV OA
2011 The loop 5 element structurally and kinetically coordinates dimers of the human kinesin-5, Eg5. F. Jon Kull CV OA
2011 Thermal Properties of Rhodopsin: Insight into Molecular Mechanism of Dim-Light Vision E. Chui-Ying Yan CV OA
2010 Effects of curvature and composition on α-synuclein binding to lipid vesicles Elizabeth Rhoades GS
2010 In Situ Misfolding of Human Islet Amyloid Polypeptide at Interfaces Probed by Sum Frequency Generation Spectroscopy E. Chui-Ying Yan CV OA
2010 Lipid bilayer domain fluctuations as a probe of membrane viscosity Tobias Baumgart GS
2010 Single molecule characterization of α-synuclein in aggregation-prone states Elizabeth Rhoades GS
2010 The role of the lipid bilayer in tau aggregation Elizabeth Rhoades GS
2009 Bending stiffness depends on curvature of ternary lipid mixture tubular membranes Tobias Baumgart GS
2009 Different Individual Amyloid Fibrils Exhibit Different Beta Sheet Secondary Structures via Near-field Infrared Spectroscopy Zahra Fakhraai CV OA GS
2009 Elastic moduli of collagen gels can be predicted from two-dimensional confocal microscopy Laura J. Kaufman GS
2009 Rapid actin-dependent viral motility in live cells Xiaowei Zhuang CV OA GS
2009 Rheology and confocal reflectance microscopy as probes of mechanical properties and structure during collagen and collagen/hyaluronan self-assembly Laura J. Kaufman GS
2009 Single-molecule study of metalloregulator CueR-DNA interactions using engineered Holliday junctions Peng Chen GS
2009 Sorting of lipids and proteins in membrane curvature gradients Tobias Baumgart GS
2008 Real-Time Cross-Correlation Image Analysis of Early Events in IgE Receptor Signaling Barbara A. Baird CV OA GS
2008 The Role of Extracellular Matrix in Glioma Invasion: A Cellular Potts Model Approach Brenda Rubenstein; Laura J. Kaufman CV OA GS
2008 Using fluorescence correlation spectroscopy to study conformational changes in denatured proteins Elizabeth Rhoades GS
2007 Flicker spectroscopy of thermal lipid bilayer domain boundary fluctuations Tobias Baumgart GS
2007 Fluorescence Resonance Energy Transfer between Lipid Probes Detects Nanoscopic Heterogeneity in the Plasma Membrane of Live Cells Barbara A. Baird CV OA GS
2006 Coexisting Domains in the Plasma Membranes of Live Cells Characterized by Spin-Label ESR Spectroscopy Barbara A. Baird CV OA GS
2006 Formation of Supported Phospholipid Bilayers on Molecular Surfaces: Role of Surface Charge Density and Electrostatic Interaction Xiaoyang Zhu OA GS
2006 Quantification of α-synuclein binding to lipid vesicles using fluorescence correlation spectroscopy Elizabeth Rhoades GS
2006 Robust reconstruction of the rate constant distribution using the phase function method Xiaowei Zhuang CV OA GS
2005 Glioma expansion in collagen I matrices: analyzing collagen concentration-dependent growth and motility patterns Laura J. Kaufman GS
2005 High Spatial Resolution Observation of Single-Molecule Dynamics in Living Cell Membranes Barbara A. Baird CV OA GS
2005 Membrane elasticity in giant vesicles with fluid phase coexistence Tobias Baumgart GS
2005 Mismatch-induced DNA unbending upon duplex opening Elizabeth Rhoades GS
2004 Single molecule protein folding Elizabeth Rhoades GS
2004 Using single-particle tracking to study nuclear trafficking of viral genes Xiaowei Zhuang CV OA GS
2003 Development of fluorescent silica nanoparticles for biological imaging Barbara A. Baird GS
2003 Micelle formation by a fragment of human islet amyloid polypeptide Elizabeth Rhoades GS
2003 Ordered and Disordered Phases Coexist in Plasma Membrane Vesicles of RBL-2H3 Mast Cells. An ESR Study Barbara A. Baird CV OA GS
2003 The role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single channel currents. Abraham Nitzan CV OA GS
2002 Direct molecular dynamics observation of protein folding transition state ensemble Eugene I. Shakhnovich GS
2002 Lateral diffusion in substrate-supported lipid monolayers as a function of ambient relative humidity Tobias Baumgart GS
2002 Semi-synthesis of the potassium channel, KcsA Tom Muir CV
2002 Single particle tracking of fluorescent silica nanoparticles bound to IgE receptors on RBL mast cells. Barbara A. Baird GS
2001 Cross-Correlation Analysis of Inner-Leaflet-Anchored Green Fluorescent Protein Co-Redistributed with IgE Receptors and Outer Leaflet Lipid Raft Components Barbara A. Baird CV OA GS
2001 Effect of Bilayer Surface charge Density on Molecular Adsorption and Transport across Liposome Bilayers E. Chui-Ying Yan CV OA
2000 Effects of Cholesterol on Molecular Transport of Organic Cations across Liposome Bilayers Probed by Second Harmonic Generation E. Chui-Ying Yan CV OA
1999 A Lattice Relaxation Algorithm for 3D Poisson-Nernst-Planck Theory with Application to Ion Transport Through the Gramicidin A Channel Abraham Nitzan CV OA GS
1999 Electron Spin Resonance Characterization of Liquid Ordered Phase of Detergent-Resistant Membranes from RBL-2H3 Cells Barbara A. Baird CV OA GS
1996 Constrained Diffusion or Immobile Fraction on Cell Surfaces: A New Interpretation Barbara A. Baird CV OA GS
1995 The shapes of the motor domains of two oppositely directed microtubule motors, ncd and kinesin: a neutron scattering study. F. Jon Kull CV OA
1993 FPR data on mobility of cell-surface proteins reevaluated in terms of temporally constrained molecular motions Barbara A. Baird GS
1992 Energy flow in heme proteins probed by femtosecond infrared spectroscopy Tianquan “Tim” Lian CV
1991 Ultrafast motion of heme-CO in hemoglobin Tianquan “Tim” Lian CV
1991 Vibrational structure of the formyl group on heme A: Implications on the properties of cytochrome c oxidase Sharon Hammes-Schiffer CV
1989 Competition between solution and cell surface receptors for ligand. Dissociation of hapten bound to surface antibody in the presence of solution antibody Barbara A. Baird CV OA GS
1987 The effect of receptor density on the forward rate constant for binding of ligands to cell surface receptors Barbara A. Baird CV OA GS
1986 Inter-receptor spacing in IgE aggregates on the surface of RBL cells Barbara A. Baird GS