Academic

Eugene I. Shakhnovich

Chemistry · 0000-0002-4769-2265

Citations received by year

Google Scholar profile

Series: Citations received.0500100015001993 Citations received 1251994 Citations received 3501995 Citations received 5951996 Citations received 6501997 Citations received 7931998 Citations received 10221999 Citations received 8952000 Citations received 7502001 Citations received 10382002 Citations received 9722003 Citations received 9502004 Citations received 12672005 Citations received 12032006 Citations received 12792007 Citations received 12492008 Citations received 12442009 Citations received 10752010 Citations received 10912011 Citations received 10062012 Citations received 10762013 Citations received 10502014 Citations received 10412015 Citations received 8692016 Citations received 9692017 Citations received 10402018 Citations received 10102019 Citations received 10252020 Citations received 9582021 Citations received 12492022 Citations received 11052023 Citations received 11752024 Citations received 11392025 Citations received 12512026 Citations received 10391993200020052010201520202026Citations receivedCalendar year
Series: Citations received.0500100015001993 Citations received 1251994 Citations received 3501995 Citations received 5951996 Citations received 6501997 Citations received 7931998 Citations received 10221999 Citations received 8952000 Citations received 7502001 Citations received 10382002 Citations received 9722003 Citations received 9502004 Citations received 12672005 Citations received 12032006 Citations received 12792007 Citations received 12492008 Citations received 12442009 Citations received 10752010 Citations received 10912011 Citations received 10062012 Citations received 10762013 Citations received 10502014 Citations received 10412015 Citations received 8692016 Citations received 9692017 Citations received 10402018 Citations received 10102019 Citations received 10252020 Citations received 9582021 Citations received 12492022 Citations received 11052023 Citations received 11752024 Citations received 11392025 Citations received 12512026 Citations received 10391993200020052010201520202026Citations receivedCalendar year

Citations received in each calendar year across this verified Scholar profile. Bars are annual counts; missing years are unknown. 2026 is an incomplete calendar year.

Publications

100 rows, 100 from the Scholar profile only

Scholar profile verified; its publication list is only partly imported (100 records fetched). Publication-based totals may be incomplete. The annual citation chart uses the profile’s separate citation history.

2022 Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential Nature communications article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential
year scholar 2022
venue scholar Nature communications
kind scholar other
first author scholar Axelrod

Citations

OpenAlex
none
Scholar
118

Match decisions

No decision recorded; a single record.

2021 Accelerating high-throughput virtual screening through molecular pool-based active learning Chemical science article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Accelerating high-throughput virtual screening through molecular pool-based active learning
year scholar 2021
venue scholar Chemical science
kind scholar other
first author scholar Graff

Citations

OpenAlex
none
Scholar
428

Match decisions

No decision recorded; a single record.

2020 Dynamic metastable long-living droplets formed by sticker-spacer proteins Elife article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Dynamic metastable long-living droplets formed by sticker-spacer proteins
year scholar 2020
venue scholar Elife
kind scholar other
first author scholar Ranganathan

Citations

OpenAlex
none
Scholar
190

Match decisions

No decision recorded; a single record.

2019 Common activation mechanism of class A GPCRs elife article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Common activation mechanism of class A GPCRs
year scholar 2019
venue scholar elife
kind scholar other
first author scholar Zhou

Citations

OpenAlex
none
Scholar
779

Match decisions

No decision recorded; a single record.

2018 Differential enzyme flexibility probed using solid-state nanopores ACS nano article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Differential enzyme flexibility probed using solid-state nanopores
year scholar 2018
venue scholar ACS nano
kind scholar other
first author scholar Hu

Citations

OpenAlex
none
Scholar
116

Match decisions

No decision recorded; a single record.

2017 Bridging the physical scales in evolutionary biology: from protein sequence space to fitness of organisms and populations Current opinion in structural biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Bridging the physical scales in evolutionary biology: from protein sequence space to fitness of organisms and populations
year scholar 2017
venue scholar Current opinion in structural biology
kind scholar other
first author scholar Bershtein

Citations

OpenAlex
none
Scholar
90

Match decisions

No decision recorded; a single record.

2017 Evidence of evolutionary selection for cotranslational folding Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Evidence of evolutionary selection for cotranslational folding
year scholar 2017
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Jacobs

Citations

OpenAlex
none
Scholar
123

Match decisions

No decision recorded; a single record.

2016 Biophysical principles predict fitness landscapes of drug resistance Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Biophysical principles predict fitness landscapes of drug resistance
year scholar 2016
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Rodrigues

Citations

OpenAlex
none
Scholar
167

Match decisions

No decision recorded; a single record.

2016 OpenGrowth: an automated and rational algorithm for finding new protein ligands Journal of medicinal chemistry article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar OpenGrowth: an automated and rational algorithm for finding new protein ligands
year scholar 2016
venue scholar Journal of medicinal chemistry
kind scholar other
first author scholar Cheron

Citations

OpenAlex
none
Scholar
88

Match decisions

No decision recorded; a single record.

2015 Protein homeostasis imposes a barrier on functional integration of horizontally transferred genes in bacteria PLoS genetics article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Protein homeostasis imposes a barrier on functional integration of horizontally transferred genes in bacteria
year scholar 2015
venue scholar PLoS genetics
kind scholar other
first author scholar Bershtein

Citations

OpenAlex
none
Scholar
92

Match decisions

No decision recorded; a single record.

2014 Merging molecular mechanism and evolution: theory and computation at the interface of biophysics and evolutionary population genetics Current opinion in structural biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Merging molecular mechanism and evolution: theory and computation at the interface of biophysics and evolutionary population genetics
year scholar 2014
venue scholar Current opinion in structural biology
kind scholar other
first author scholar Serohijos

Citations

OpenAlex
none
Scholar
104

Match decisions

No decision recorded; a single record.

2013 Protein quality control acts on folding intermediates to shape the effects of mutations on organismal fitness Molecular cell article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Protein quality control acts on folding intermediates to shape the effects of mutations on organismal fitness
year scholar 2013
venue scholar Molecular cell
kind scholar other
first author scholar Bershtein

Citations

OpenAlex
none
Scholar
207

Match decisions

No decision recorded; a single record.

2012 Protein biophysics explains why highly abundant proteins evolve slowly Cell reports article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Protein biophysics explains why highly abundant proteins evolve slowly
year scholar 2012
venue scholar Cell reports
kind scholar other
first author scholar Serohijos

Citations

OpenAlex
none
Scholar
124

Match decisions

No decision recorded; a single record.

2012 Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations
year scholar 2012
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Bershtein

Citations

OpenAlex
none
Scholar
122

Match decisions

No decision recorded; a single record.

2012 The interface of protein structure, protein biophysics, and molecular evolution Protein Science article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The interface of protein structure, protein biophysics, and molecular evolution
year scholar 2012
venue scholar Protein Science
kind scholar other
first author scholar Liberles

Citations

OpenAlex
none
Scholar
273

Match decisions

No decision recorded; a single record.

2011 A biophysical protein folding model accounts for most mutational fitness effects in viruses Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar A biophysical protein folding model accounts for most mutational fitness effects in viruses
year scholar 2011
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Wylie

Citations

OpenAlex
none
Scholar
240

Match decisions

No decision recorded; a single record.

2011 Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions
year scholar 2011
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Heo

Citations

OpenAlex
none
Scholar
117

Match decisions

No decision recorded; a single record.

2010 De novo design: balancing novelty and confined chemical space Expert opinion on drug discovery article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar De novo design: balancing novelty and confined chemical space
year scholar 2010
venue scholar Expert opinion on drug discovery
kind scholar other
first author scholar Kutchukian

Citations

OpenAlex
none
Scholar
126

Match decisions

No decision recorded; a single record.

2010 Optimality of mutation and selection in germinal centers PLoS computational biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Optimality of mutation and selection in germinal centers
year scholar 2010
venue scholar PLoS computational biology
kind scholar other
first author scholar Zhang

Citations

OpenAlex
none
Scholar
95

Match decisions

No decision recorded; a single record.

2009 All-atom model for stabilization of α-helical structure in peptides by hydrocarbon staples Journal of the American Chemical Society article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar All-atom model for stabilization of α-helical structure in peptides by hydrocarbon staples
year scholar 2009
venue scholar Journal of the American Chemical Society
kind scholar other
first author scholar Kutchukian

Citations

OpenAlex
none
Scholar
154

Match decisions

No decision recorded; a single record.

2009 FOG: Fragment Optimized Growth Algorithm for the de Novo Generation of Molecules Occupying Druglike Chemical Space Journal of chemical information and modeling article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar FOG: Fragment Optimized Growth Algorithm for the de Novo Generation of Molecules Occupying Druglike Chemical Space
year scholar 2009
venue scholar Journal of chemical information and modeling
kind scholar other
first author scholar Kutchukian

Citations

OpenAlex
none
Scholar
101

Match decisions

No decision recorded; a single record.

2008 Constraints imposed by non-functional protein–protein interactions on gene expression and proteome size Molecular systems biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Constraints imposed by non-functional protein–protein interactions on gene expression and proteome size
year scholar 2008
venue scholar Molecular systems biology
kind scholar other
first author scholar Zhang

Citations

OpenAlex
none
Scholar
123

Match decisions

No decision recorded; a single record.

2007 All-atom ab initio folding of a diverse set of proteins Structure article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar All-atom ab initio folding of a diverse set of proteins
year scholar 2007
venue scholar Structure
kind scholar other
first author scholar Yang

Citations

OpenAlex
none
Scholar
113

Match decisions

No decision recorded; a single record.

2007 Positive and negative design in stability and thermal adaptation of natural proteins PLoS Computational Biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Positive and negative design in stability and thermal adaptation of natural proteins
year scholar 2007
venue scholar PLoS Computational Biology
kind scholar other
first author scholar Berezovsky

Citations

OpenAlex
none
Scholar
167

Match decisions

No decision recorded; a single record.

2007 Protein and DNA sequence determinants of thermophilic adaptation PLoS computational biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Protein and DNA sequence determinants of thermophilic adaptation
year scholar 2007
venue scholar PLoS computational biology
kind scholar other
first author scholar Zeldovich

Citations

OpenAlex
none
Scholar
419

Match decisions

No decision recorded; a single record.

2007 Protein stability imposes limits on organism complexity and speed of molecular evolution Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Protein stability imposes limits on organism complexity and speed of molecular evolution
year scholar 2007
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Zeldovich

Citations

OpenAlex
none
Scholar
330

Match decisions

No decision recorded; a single record.

2007 Robust protein–protein interactions in crowded cellular environments Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Robust protein–protein interactions in crowded cellular environments
year scholar 2007
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Deeds

Citations

OpenAlex
none
Scholar
92

Match decisions

No decision recorded; a single record.

2007 Structural similarity enhances interaction propensity of proteins Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Structural similarity enhances interaction propensity of proteins
year scholar 2007
venue scholar Journal of molecular biology
kind scholar other
first author scholar Lukatsky

Citations

OpenAlex
none
Scholar
143

Match decisions

No decision recorded; a single record.

2007 The folding mechanics of a knotted protein Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The folding mechanics of a knotted protein
year scholar 2007
venue scholar Journal of molecular biology
kind scholar other
first author scholar Wallin

Citations

OpenAlex
none
Scholar
173

Match decisions

No decision recorded; a single record.

2006 A simple physical model for scaling in protein-protein interaction networks Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar A simple physical model for scaling in protein-protein interaction networks
year scholar 2006
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Deeds

Citations

OpenAlex
none
Scholar
137

Match decisions

No decision recorded; a single record.

2006 On the origin and highly likely completeness of single-domain protein structures Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar On the origin and highly likely completeness of single-domain protein structures
year scholar 2006
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Zhang

Citations

OpenAlex
none
Scholar
204

Match decisions

No decision recorded; a single record.

2006 Protein folding thermodynamics and dynamics: where physics, chemistry and biology meet Chemical reviews article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Protein folding thermodynamics and dynamics: where physics, chemistry and biology meet
year scholar 2006
venue scholar Chemical reviews
kind scholar other
first author scholar Shakhnovich

Citations

OpenAlex
none
Scholar
487

Match decisions

No decision recorded; a single record.

2005 Entropic stabilization of proteins and its proteomic consequences PLoS computational biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Entropic stabilization of proteins and its proteomic consequences
year scholar 2005
venue scholar PLoS computational biology
kind scholar other
first author scholar Berezovsky

Citations

OpenAlex
none
Scholar
126

Match decisions

No decision recorded; a single record.

2005 Physics and evolution of thermophilic adaptation Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Physics and evolution of thermophilic adaptation
year scholar 2005
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Berezovsky

Citations

OpenAlex
none
Scholar
364

Match decisions

No decision recorded; a single record.

2005 Protein structure and evolutionary history determine sequence space topology Genome research article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Protein structure and evolutionary history determine sequence space topology
year scholar 2005
venue scholar Genome research
kind scholar other
first author scholar Shakhnovich

Citations

OpenAlex
none
Scholar
109

Match decisions

No decision recorded; a single record.

2005 Reconstruction of the src-SH3 protein domain transition state ensemble using multiscale molecular dynamics simulations Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Reconstruction of the src-SH3 protein domain transition state ensemble using multiscale molecular dynamics simulations
year scholar 2005
venue scholar Journal of molecular biology
kind scholar other
first author scholar Ding

Citations

OpenAlex
none
Scholar
97

Match decisions

No decision recorded; a single record.

2004 Commitment and nucleation in the protein G transition state Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Commitment and nucleation in the protein G transition state
year scholar 2004
venue scholar Journal of molecular biology
kind scholar other
first author scholar Hubner

Citations

OpenAlex
none
Scholar
92

Match decisions

No decision recorded; a single record.

2003 Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases
year scholar 2003
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Li

Citations

OpenAlex
none
Scholar
114

Match decisions

No decision recorded; a single record.

2003 Natural selection of more designable folds: a mechanism for thermophilic adaptation Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Natural selection of more designable folds: a mechanism for thermophilic adaptation
year scholar 2003
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar England

Citations

OpenAlex
none
Scholar
119

Match decisions

No decision recorded; a single record.

2003 Structural determinant of protein designability Physical review letters article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Structural determinant of protein designability
year scholar 2003
venue scholar Physical review letters
kind scholar other
first author scholar England

Citations

OpenAlex
none
Scholar
153

Match decisions

No decision recorded; a single record.

2002 A structure-based method for derivation of all-atom potentials for protein folding Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar A structure-based method for derivation of all-atom potentials for protein folding
year scholar 2002
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Kussell

Citations

OpenAlex
none
Scholar
91

Match decisions

No decision recorded; a single record.

2002 Combinatorial computational method gives new picomolar ligands for a known enzyme Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Combinatorial computational method gives new picomolar ligands for a known enzyme
year scholar 2002
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Grzybowski

Citations

OpenAlex
none
Scholar
123

Match decisions

No decision recorded; a single record.

2002 Direct molecular dynamics observation of protein folding transition state ensemble Biophysical journal article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Direct molecular dynamics observation of protein folding transition state ensemble
year scholar 2002
venue scholar Biophysical journal
kind scholar other
first author scholar Ding

Citations

OpenAlex
none
Scholar
167

Match decisions

No decision recorded; a single record.

2002 Expanding protein universe and its origin from the biological Big Bang Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Expanding protein universe and its origin from the biological Big Bang
year scholar 2002
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Dokholyan

Citations

OpenAlex
none
Scholar
230

Match decisions

No decision recorded; a single record.

2002 Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism
year scholar 2002
venue scholar Journal of molecular biology
kind scholar other
first author scholar Ding

Citations

OpenAlex
none
Scholar
202

Match decisions

No decision recorded; a single record.

2002 Small molecule growth 2001 (SMoG2001): An improved knowledge-based scoring function for protein− ligand interactions Journal of medicinal chemistry article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Small molecule growth 2001 (SMoG2001): An improved knowledge-based scoring function for protein− ligand interactions
year scholar 2002
venue scholar Journal of medicinal chemistry
kind scholar other
first author scholar Ishchenko

Citations

OpenAlex
none
Scholar
252

Match decisions

No decision recorded; a single record.

2002 The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation
year scholar 2002
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Shimada

Citations

OpenAlex
none
Scholar
208

Match decisions

No decision recorded; a single record.

2002 Topological determinants of protein folding Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Topological determinants of protein folding
year scholar 2002
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Dokholyan

Citations

OpenAlex
none
Scholar
370

Match decisions

No decision recorded; a single record.

2001 Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations
year scholar 2001
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Li

Citations

OpenAlex
none
Scholar
130

Match decisions

No decision recorded; a single record.

2001 Evolutionary conservation of the folding nucleus Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Evolutionary conservation of the folding nucleus
year scholar 2001
venue scholar Journal of molecular biology
kind scholar other
first author scholar Mirny

Citations

OpenAlex
none
Scholar
172

Match decisions

No decision recorded; a single record.

2001 Protein folding theory: from lattice to all-atom models Annual review of biophysics and biomolecular structure article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Protein folding theory: from lattice to all-atom models
year scholar 2001
venue scholar Annual review of biophysics and biomolecular structure
kind scholar other
first author scholar Mirny

Citations

OpenAlex
none
Scholar
477

Match decisions

No decision recorded; a single record.

2001 The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation
year scholar 2001
venue scholar Journal of molecular biology
kind scholar other
first author scholar Shimada

Citations

OpenAlex
none
Scholar
173

Match decisions

No decision recorded; a single record.

2001 Understanding hierarchical protein evolution from first principles Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Understanding hierarchical protein evolution from first principles
year scholar 2001
venue scholar Journal of molecular biology
kind scholar other
first author scholar Dokholyan

Citations

OpenAlex
none
Scholar
201

Match decisions

No decision recorded; a single record.

2000 Identifying the protein folding nucleus using molecular dynamics Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Identifying the protein folding nucleus using molecular dynamics
year scholar 2000
venue scholar Journal of molecular biology
kind scholar other
first author scholar Dokholyan

Citations

OpenAlex
none
Scholar
185

Match decisions

No decision recorded; a single record.

2000 Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus Nature structural biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus
year scholar 2000
venue scholar Nature structural biology
kind scholar other
first author scholar Li

Citations

OpenAlex
none
Scholar
193

Match decisions

No decision recorded; a single record.

2000 What can disulfide bonds tell us about protein energetics, function and folding: simulations and bioninformatics analysis Journal of Molecular Biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar What can disulfide bonds tell us about protein energetics, function and folding: simulations and bioninformatics analysis
year scholar 2000
venue scholar Journal of Molecular Biology
kind scholar other
first author scholar Abkevich

Citations

OpenAlex
none
Scholar
160

Match decisions

No decision recorded; a single record.

1999 Evidence for the role of PrPC helix 1 in the hydrophilic seeding of prion aggregates Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Evidence for the role of PrPC helix 1 in the hydrophilic seeding of prion aggregates
year scholar 1999
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Morrissey

Citations

OpenAlex
none
Scholar
161

Match decisions

No decision recorded; a single record.

1999 Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function
year scholar 1999
venue scholar Journal of molecular biology
kind scholar other
first author scholar Mirny

Citations

OpenAlex
none
Scholar
488

Match decisions

No decision recorded; a single record.

1998 Discrete molecular dynamics studies of the folding of a protein-like model Folding and design article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Discrete molecular dynamics studies of the folding of a protein-like model
year scholar 1998
venue scholar Folding and design
kind scholar other
first author scholar Dokholyan

Citations

OpenAlex
none
Scholar
385

Match decisions

No decision recorded; a single record.

1998 Estimating the entropic cost of self-assembly of multiparticle hydrogen-bonded aggregates based on the cyanuric Acid⊙ melamine lattice The Journal of Organic Chemistry article journal CV OA GS Scholar only

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title scholar Estimating the entropic cost of self-assembly of multiparticle hydrogen-bonded aggregates based on the cyanuric Acid⊙ melamine lattice
year scholar 1998
venue scholar The Journal of Organic Chemistry
kind scholar other
first author scholar Mammen

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1998 Folding and misfolding of designed proteinlike chains with mutations The Journal of chemical physics article journal CV OA GS Scholar only

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title scholar Folding and misfolding of designed proteinlike chains with mutations
year scholar 1998
venue scholar The Journal of chemical physics
kind scholar other
first author scholar Tiana

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1998 How evolution makes proteins fold quickly Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

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title scholar How evolution makes proteins fold quickly
year scholar 1998
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Mirny

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1998 On the transition coordinate for protein folding The Journal of chemical physics article journal CV OA GS Scholar only

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title scholar On the transition coordinate for protein folding
year scholar 1998
venue scholar The Journal of chemical physics
kind scholar other
first author scholar Du

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1998 Protein design: a perspective from simple tractable models Folding and Design article journal CV OA GS Scholar only

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title scholar Protein design: a perspective from simple tractable models
year scholar 1998
venue scholar Folding and Design
kind scholar other
first author scholar Shakhnovich

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1998 Temperature dependence of the folding rate in a simple protein model: search for a “glass” transition The Journal of chemical physics article journal CV OA GS Scholar only

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title scholar Temperature dependence of the folding rate in a simple protein model: search for a “glass” transition
year scholar 1998
venue scholar The Journal of chemical physics
kind scholar other
first author scholar Gutin

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103

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1998 Using a convenient, quantitative model for torsional entropy to establish qualitative trends for molecular processes that restrict conformational freedom The Journal of Organic Chemistry article journal CV OA GS Scholar only

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title scholar Using a convenient, quantitative model for torsional entropy to establish qualitative trends for molecular processes that restrict conformational freedom
year scholar 1998
venue scholar The Journal of Organic Chemistry
kind scholar other
first author scholar Mammen

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1997 SMoG: de novo design method based on simple, fast, and accurate free energy estimates. 2. Case studies in molecular design Journal of the American Chemical Society article journal CV OA GS Scholar only

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title scholar SMoG: de novo design method based on simple, fast, and accurate free energy estimates. 2. Case studies in molecular design
year scholar 1997
venue scholar Journal of the American Chemical Society
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first author scholar DeWitte

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1997 Theoretical studies of protein-folding thermodynamics and kinetics Current opinion in structural biology article journal CV OA GS Scholar only

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title scholar Theoretical studies of protein-folding thermodynamics and kinetics
year scholar 1997
venue scholar Current opinion in structural biology
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first author scholar Shakhnovich

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1996 Adsorption-freezing transition for random heteropolymers near disordered 2D manifolds due to “pattern matching” Physical review letters article journal CV OA GS Scholar only

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title scholar Adsorption-freezing transition for random heteropolymers near disordered 2D manifolds due to “pattern matching”
year scholar 1996
venue scholar Physical review letters
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first author scholar Srebnik

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1996 Chain length scaling of protein folding time Physical Review Letters article journal CV OA GS Scholar only

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title scholar Chain length scaling of protein folding time
year scholar 1996
venue scholar Physical Review Letters
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first author scholar Gutin

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1996 How to derive a protein folding potential? A new approach to an old problem Journal of molecular biology article journal CV OA GS Scholar only

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title scholar How to derive a protein folding potential? A new approach to an old problem
year scholar 1996
venue scholar Journal of molecular biology
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first author scholar Mirny

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1996 Improved design of stable and fast-folding model proteins Folding and Design article journal CV OA GS Scholar only

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title scholar Improved design of stable and fast-folding model proteins
year scholar 1996
venue scholar Folding and Design
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first author scholar Abkevich

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1996 Modelling protein folding: the beauty and power of simplicity Folding and Design article journal CV OA GS Scholar only

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title scholar Modelling protein folding: the beauty and power of simplicity
year scholar 1996
venue scholar Folding and Design
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first author scholar Shakhnovich

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1996 SMoG: de novo design method based on simple, fast, and accurate free energy estimates. 1. Methodology and supporting evidence Journal of the American Chemical Society article journal CV OA GS Scholar only

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title scholar SMoG: de novo design method based on simple, fast, and accurate free energy estimates. 1. Methodology and supporting evidence
year scholar 1996
venue scholar Journal of the American Chemical Society
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first author scholar DeWitte

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1996 Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model Folding and Design article journal CV OA GS Scholar only

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title scholar Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model
year scholar 1996
venue scholar Folding and Design
kind scholar other
first author scholar Mirny

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1995 A test of lattice protein folding algorithms. Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

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title scholar A test of lattice protein folding algorithms.
year scholar 1995
venue scholar Proceedings of the National Academy of Sciences
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first author scholar Yue

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1995 Evolution-like selection of fast-folding model proteins. Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

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title scholar Evolution-like selection of fast-folding model proteins.
year scholar 1995
venue scholar Proceedings of the National Academy of Sciences
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first author scholar Gutin

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1995 Impact of local and non-local interactions on thermodynamics and kinetics of protein folding Journal of molecular biology article journal CV OA GS Scholar only

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title scholar Impact of local and non-local interactions on thermodynamics and kinetics of protein folding
year scholar 1995
venue scholar Journal of molecular biology
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first author scholar Abkevich

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1995 Is burst hydrophobic collapse necessary for protein folding? Biochemistry article journal CV OA GS Scholar only

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title scholar Is burst hydrophobic collapse necessary for protein folding?
year scholar 1995
venue scholar Biochemistry
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first author scholar Gutin

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1994 Free energy landscape for protein folding kinetics: intermediates, traps, and multiple pathways in theory and lattice model simulations The Journal of chemical physics article journal CV OA GS Scholar only

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title scholar Free energy landscape for protein folding kinetics: intermediates, traps, and multiple pathways in theory and lattice model simulations
year scholar 1994
venue scholar The Journal of chemical physics
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first author scholar Abkevich

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1994 How does a protein fold? nature article journal CV OA GS Scholar only

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title scholar How does a protein fold?
year scholar 1994
venue scholar nature
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1994 Kinetics of protein folding: A lattice model study of the requirements for folding to the native state Journal of molecular biology article journal CV OA GS Scholar only

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title scholar Kinetics of protein folding: A lattice model study of the requirements for folding to the native state
year scholar 1994
venue scholar Journal of molecular biology
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first author scholar Šali

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1994 Proteins with selected sequences fold into unique native conformation Physical Review Letters article journal CV OA GS Scholar only

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title scholar Proteins with selected sequences fold into unique native conformation
year scholar 1994
venue scholar Physical Review Letters
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first author scholar Shakhnovich

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1994 Pseudodihedrals: simplified protein backbone representation with knowledge‐based energy Protein Science article journal CV OA GS Scholar only

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title scholar Pseudodihedrals: simplified protein backbone representation with knowledge‐based energy
year scholar 1994
venue scholar Protein Science
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first author scholar DeWitte

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1994 Specific nucleus as the transition state for protein folding: evidence from the lattice model Biochemistry article journal CV OA GS Scholar only

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title scholar Specific nucleus as the transition state for protein folding: evidence from the lattice model
year scholar 1994
venue scholar Biochemistry
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first author scholar Abkevich

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1994 Statistical mechanics of proteins with ‘‘evolutionary selected’’sequences Physical Review E article journal CV OA GS Scholar only

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title scholar Statistical mechanics of proteins with ‘‘evolutionary selected’’sequences
year scholar 1994
venue scholar Physical Review E
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first author scholar Ramanathan

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1993 A new approach to the design of stable proteins Protein Engineering, Design and Selection article journal CV OA GS Scholar only

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title scholar A new approach to the design of stable proteins
year scholar 1993
venue scholar Protein Engineering, Design and Selection
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first author scholar Shakhnovich

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1993 Engineering of stable and fast-folding sequences of model proteins. Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

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title scholar Engineering of stable and fast-folding sequences of model proteins.
year scholar 1993
venue scholar Proceedings of the National Academy of Sciences
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first author scholar Shakhnovich

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1993 Ground state of random copolymers and the discrete random energy model The Journal of chemical physics article journal CV OA GS Scholar only

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title scholar Ground state of random copolymers and the discrete random energy model
year scholar 1993
venue scholar The Journal of chemical physics
kind scholar other
first author scholar Gutin

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1993 Phase diagram of random copolymers Physical Review E article journal CV OA GS Scholar only

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title scholar Phase diagram of random copolymers
year scholar 1993
venue scholar Physical Review E
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first author scholar Sfatos

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160

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1991 Protein folding bottlenecks: A lattice Monte Carlo simulation Physical review letters article journal CV OA GS Scholar only

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title scholar Protein folding bottlenecks: A lattice Monte Carlo simulation
year scholar 1991
venue scholar Physical review letters
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first author scholar Shakhnovich

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1990 Enumeration of all compact conformations of copolymers with random sequence of links The Journal of Chemical Physics article journal CV OA GS Scholar only

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title scholar Enumeration of all compact conformations of copolymers with random sequence of links
year scholar 1990
venue scholar The Journal of Chemical Physics
kind scholar other
first author scholar Shakhnovich

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1990 Implications of thermodynamics of protein folding for evolution of primary sequences Nature article journal CV OA GS Scholar only

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title scholar Implications of thermodynamics of protein folding for evolution of primary sequences
year scholar 1990
venue scholar Nature
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first author scholar Shakhnovich

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364

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1989 Formation of microdomains in a quenched disordered heteropolymer Journal de Physique article journal CV OA GS Scholar only

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title scholar Formation of microdomains in a quenched disordered heteropolymer
year scholar 1989
venue scholar Journal de Physique
kind scholar other
first author scholar Shakhnovich

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1989 Formation of unique structure in polypeptide chains: theoretical investigation with the aid of a replica approach Biophysical chemistry article journal CV OA GS Scholar only

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title scholar Formation of unique structure in polypeptide chains: theoretical investigation with the aid of a replica approach
year scholar 1989
venue scholar Biophysical chemistry
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first author scholar Shakhnovich

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1989 Frozen states of a disordered globular heteropolymer Journal of Physics A: Mathematical and General article journal CV OA GS Scholar only

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title scholar Frozen states of a disordered globular heteropolymer
year scholar 1989
venue scholar Journal of Physics A: Mathematical and General
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first author scholar Shakhnovich

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1989 The Nonergodic (“Spin-Glass–Like”) Phase of Heteropolymer with Quenched Disordered Sequence of Links EPL (Europhysics Letters) article CV OA GS Scholar only

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title scholar The Nonergodic (“Spin-Glass–Like”) Phase of Heteropolymer with Quenched Disordered Sequence of Links
year scholar 1989
venue scholar EPL (Europhysics Letters)
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first author scholar Shakhnovich

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1989 Theory of cooperative transitions in protein molecules. II. Phase diagram for a protein molecule in solution Biopolymers: Original Research on Biomolecules article CV OA GS Scholar only

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title scholar Theory of cooperative transitions in protein molecules. II. Phase diagram for a protein molecule in solution
year scholar 1989
venue scholar Biopolymers: Original Research on Biomolecules
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first author scholar Finkelstein

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1989 Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first‐order phase transition Biopolymers: Original Research on Biomolecules article CV OA GS Scholar only

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title scholar Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first‐order phase transition
year scholar 1989
venue scholar Biopolymers: Original Research on Biomolecules
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1988 The role of topological constraints in the kinetics of collapse of macromolecules Journal de physique article journal CV OA GS Scholar only

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title scholar The role of topological constraints in the kinetics of collapse of macromolecules
year scholar 1988
venue scholar Journal de physique
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first author scholar Grosberg

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