Academic

Ruben L Gonzalez Jr

Chemistry · 0000-0002-1344-5581

Citations received by year

Google Scholar profile

Series: Citations received.01002003004002002 Citations received 15152003 Citations received 12122004 Citations received 22222005 Citations received 72722006 Citations received 60602007 Citations received 85852008 Citations received 1051052009 Citations received 1331332010 Citations received 1591592011 Citations received 2302302012 Citations received 2052052013 Citations received 2412412014 Citations received 2712712015 Citations received 2892892016 Citations received 3333332017 Citations received 2742742018 Citations received 2992992019 Citations received 2872872020 Citations received 2462462021 Citations received 3303302022 Citations received 3033032023 Citations received 3683682024 Citations received 3053052025 Citations received 3283282026 Citations received 275275200220052010201520202026Citations receivedCalendar year
Series: Citations received.01002003004002002 Citations received 152003 Citations received 122004 Citations received 222005 Citations received 722006 Citations received 602007 Citations received 852008 Citations received 1052009 Citations received 1332010 Citations received 1592011 Citations received 2302012 Citations received 2052013 Citations received 2412014 Citations received 2712015 Citations received 2892016 Citations received 3332017 Citations received 2742018 Citations received 2992019 Citations received 2872020 Citations received 2462021 Citations received 3302022 Citations received 3032023 Citations received 3682024 Citations received 3052025 Citations received 3282026 Citations received 27520022010201520202026Citations receivedCalendar year

Citations received in each calendar year across this verified Scholar profile. Bars are annual counts; missing years are unknown. 2026 is an incomplete calendar year.

Publications

84 rows, 84 from the Scholar profile only

2026 Dynamic redistribution of eIF4F controls cap-dependent translation initiation bioRxiv, 2026.06 article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Dynamic redistribution of eIF4F controls cap-dependent translation initiation
year scholar 2026
venue scholar bioRxiv
kind scholar other
first author scholar Gentry

Citations

OpenAlex
none
Scholar
none

Match decisions

No decision recorded; a single record.

2026 Elevator mechanism dynamics in a sodium-coupled dicarboxylate transporter Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Elevator mechanism dynamics in a sodium-coupled dicarboxylate transporter
year scholar 2026
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Kinz-Thompson

Citations

OpenAlex
none
Scholar
13

Match decisions

No decision recorded; a single record.

2026 Toward a unifying mechanistic model of eukaryotic translation initiation through integrative single-molecule, structural, and computational insights Current Opinion in Structural Biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Toward a unifying mechanistic model of eukaryotic translation initiation through integrative single-molecule, structural, and computational insights
year scholar 2026
venue scholar Current Opinion in Structural Biology
kind scholar other
first author scholar Ashwood

Citations

OpenAlex
none
Scholar
1

Match decisions

No decision recorded; a single record.

2025 A cascade of structural rearrangements positions peptide release factor 2 for polypeptide hydrolysis on the ribosome Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar A cascade of structural rearrangements positions peptide release factor 2 for polypeptide hydrolysis on the ribosome
year scholar 2025
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Michael

Citations

OpenAlex
none
Scholar
2

Match decisions

No decision recorded; a single record.

2025 RNA adapts its flexibility to efficiently fold and resist unfolding Nucleic Acids Research 53 (14), gkaf681 other journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar RNA adapts its flexibility to efficiently fold and resist unfolding
year scholar 2025
venue scholar Nucleic Acids Research
kind scholar other
first author scholar Jang

Citations

OpenAlex
none
Scholar
1

Match decisions

No decision recorded; a single record.

2025 The mechanism of mRNA cap recognition Nature article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The mechanism of mRNA cap recognition
year scholar 2025
venue scholar Nature
kind scholar other
first author scholar Gentry

Citations

OpenAlex
none
Scholar
45

Match decisions

No decision recorded; a single record.

2024 A dynamic compositional equilibrium governs mRNA recognition by eIF3 bioRxiv other CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar A dynamic compositional equilibrium governs mRNA recognition by eIF3
year scholar 2024
venue scholar bioRxiv
kind scholar other
first author scholar Ide

Citations

OpenAlex
none
Scholar
5

Match decisions

No decision recorded; a single record.

2024 Fluorescence resonance energy transfer at the single-molecule level Nature Reviews Methods Primers article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Fluorescence resonance energy transfer at the single-molecule level
year scholar 2024
venue scholar Nature Reviews Methods Primers
kind scholar other
first author scholar Ha

Citations

OpenAlex
none
Scholar
113

Match decisions

No decision recorded; a single record.

2023 Comparative genetic, biochemical, and biophysical analyses of the four E. coli ABCF paralogs support distinct functions related to mRNA translation Biorxiv, 2023.06 article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Comparative genetic, biochemical, and biophysical analyses of the four E. coli ABCF paralogs support distinct functions related to mRNA translation
year scholar 2023
venue scholar Biorxiv
kind scholar other
first author scholar Ousalem

Citations

OpenAlex
none
Scholar
16

Match decisions

No decision recorded; a single record.

2023 Cryo-EM studies of the four E. coli paralogs establish ABCF proteins as master plumbers of the peptidyl-transferase center of the ribosome bioRxiv, 2023.06 article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Cryo-EM studies of the four E. coli paralogs establish ABCF proteins as master plumbers of the peptidyl-transferase center of the ribosome
year scholar 2023
venue scholar bioRxiv
kind scholar other
first author scholar Singh

Citations

OpenAlex
none
Scholar
19

Match decisions

No decision recorded; a single record.

2023 Ratchet, swivel, tilt and roll: a complete description of subunit rotation in the ribosome Nucleic acids research article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Ratchet, swivel, tilt and roll: a complete description of subunit rotation in the ribosome
year scholar 2023
venue scholar Nucleic acids research
kind scholar other
first author scholar Hassan

Citations

OpenAlex
none
Scholar
47

Match decisions

No decision recorded; a single record.

2023 Ribosomal protein engineering enables previously inaccessible single-molecule fluorescence studies of translation PROTEIN SCIENCE article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Ribosomal protein engineering enables previously inaccessible single-molecule fluorescence studies of translation
year scholar 2023
venue scholar PROTEIN SCIENCE
kind scholar other
first author scholar Zhang

Citations

OpenAlex
none
Scholar
none

Match decisions

No decision recorded; a single record.

2023 The mechanism of mRNA activation bioRxiv other CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The mechanism of mRNA activation
year scholar 2023
venue scholar bioRxiv
kind scholar other
first author scholar Gentry

Citations

OpenAlex
none
Scholar
7

Match decisions

No decision recorded; a single record.

2022 Characterizing the conformational free-energy landscape of RNA stem-loops using single-molecule field-effect transistors Journal of the American Chemical Society article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Characterizing the conformational free-energy landscape of RNA stem-loops using single-molecule field-effect transistors
year scholar 2022
venue scholar Journal of the American Chemical Society
kind scholar other
first author scholar Jang

Citations

OpenAlex
none
Scholar
10

Match decisions

No decision recorded; a single record.

2022 Inferring the shape of data: a probabilistic framework for analysing experiments in the natural sciences Proceedings. Mathematical, Physical, and Engineering Sciences conference paper journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Inferring the shape of data: a probabilistic framework for analysing experiments in the natural sciences
year scholar 2022
venue scholar Proceedings. Mathematical, Physical, and Engineering Sciences
kind scholar other
first author scholar Ray

Citations

OpenAlex
none
Scholar
6

Match decisions

No decision recorded; a single record.

2022 Mechanistic implications of the interaction of the soluble substrate-binding protein with a type II ABC importer bioRxiv, 2022.12 article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Mechanistic implications of the interaction of the soluble substrate-binding protein with a type II ABC importer
year scholar 2022
venue scholar bioRxiv
kind scholar other
first author scholar Zhu

Citations

OpenAlex
none
Scholar
2

Match decisions

No decision recorded; a single record.

2022 NusG-mediated coupling of transcription and translation enhances gene expression by suppressing RNA polymerase backtracking Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar NusG-mediated coupling of transcription and translation enhances gene expression by suppressing RNA polymerase backtracking
year scholar 2022
venue scholar Journal of molecular biology
kind scholar other
first author scholar Bailey

Citations

OpenAlex
none
Scholar
30

Match decisions

No decision recorded; a single record.

2022 Realtime observation of ATP-driven single B12 molecule translocation through BtuCD-F bioRxiv, 2022.12 article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Realtime observation of ATP-driven single B12 molecule translocation through BtuCD-F
year scholar 2022
venue scholar bioRxiv
kind scholar other
first author scholar Zhu

Citations

OpenAlex
none
Scholar
3

Match decisions

No decision recorded; a single record.

2021 Bayesian inference: The comprehensive approach to analyzing single-molecule experiments Annual Review of Biophysics article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Bayesian inference: The comprehensive approach to analyzing single-molecule experiments
year scholar 2021
venue scholar Annual Review of Biophysics
kind scholar other
first author scholar Kinz-Thompson

Citations

OpenAlex
none
Scholar
36

Match decisions

No decision recorded; a single record.

2021 Insights into genome recoding from the mechanism of a classic+ 1-frameshifting tRNA Nature Communications article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Insights into genome recoding from the mechanism of a classic+ 1-frameshifting tRNA
year scholar 2021
venue scholar Nature Communications
kind scholar other
first author scholar Gamper

Citations

OpenAlex
none
Scholar
46

Match decisions

No decision recorded; a single record.

2021 Mechanistic studies of non-canonical amino acid mutagenesis Methods in enzymology article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Mechanistic studies of non-canonical amino acid mutagenesis
year scholar 2021
venue scholar Methods in enzymology
kind scholar other
first author scholar Fleisher

Citations

OpenAlex
none
Scholar
4

Match decisions

No decision recorded; a single record.

2021 NusG links transcription and translation in Escherichia coli extracts bioRxiv, 2021.07 article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar NusG links transcription and translation in Escherichia coli extracts
year scholar 2021
venue scholar bioRxiv
kind scholar other
first author scholar Bailey

Citations

OpenAlex
none
Scholar
1

Match decisions

No decision recorded; a single record.

2020 Cap‐independent translation of a subset of cellular mRNAs is driven by the direct recruitment of eIF4G or DAP5 to the 5′ UTR of these mRNAs The FASEB Journal article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Cap‐independent translation of a subset of cellular mRNAs is driven by the direct recruitment of eIF4G or DAP5 to the 5′ UTR of these mRNAs
year scholar 2020
venue scholar The FASEB Journal
kind scholar other
first author scholar Haizel

Citations

OpenAlex
none
Scholar
none

Match decisions

No decision recorded; a single record.

2020 Multiplexed genomic encoding of non-canonical amino acids for labeling large complexes Nature chemical biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Multiplexed genomic encoding of non-canonical amino acids for labeling large complexes
year scholar 2020
venue scholar Nature chemical biology
kind scholar other
first author scholar Desai

Citations

OpenAlex
none
Scholar
14

Match decisions

No decision recorded; a single record.

2020 RNA Polymerase and the Ribosome: In Touch or out of Touch? Journal of Molecular Biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar RNA Polymerase and the Ribosome: In Touch or out of Touch?
year scholar 2020
venue scholar Journal of Molecular Biology
kind scholar other
first author scholar Gonzalez

Citations

OpenAlex
none
Scholar
none

Match decisions

No decision recorded; a single record.

2020 The alarmones (p) ppGpp directly regulate translation initiation during entry into quiescence Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The alarmones (p) ppGpp directly regulate translation initiation during entry into quiescence
year scholar 2020
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Diez

Citations

OpenAlex
none
Scholar
116

Match decisions

No decision recorded; a single record.

2019 Late steps in bacterial translation initiation visualized using time-resolved cryo-EM Nature version 2023 Late Steps in Bacterial Translation Initiation Visualized Using Time-Resolved Cryo-EM article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Late steps in bacterial translation initiation visualized using time-resolved cryo-EM
year scholar 2019
venue scholar Nature
kind scholar other
first author scholar Kaledhonkar

Citations

OpenAlex
none
Scholar
190

Match decisions

No decision recorded; a single record.

2019 Multiplexed, bioorthogonal labeling of multicomponent, biomolecular complexes using genomically encoded, non-canonical amino acids bioRxiv other CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Multiplexed, bioorthogonal labeling of multicomponent, biomolecular complexes using genomically encoded, non-canonical amino acids
year scholar 2019
venue scholar bioRxiv
kind scholar other
first author scholar Desai

Citations

OpenAlex
none
Scholar
1

Match decisions

No decision recorded; a single record.

2019 (p) ppGpp directly regulates translation initiation during entry into quiescence bioRxiv other CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar (p) ppGpp directly regulates translation initiation during entry into quiescence
year scholar 2019
venue scholar bioRxiv
kind scholar other
first author scholar Diez

Citations

OpenAlex
none
Scholar
2

Match decisions

No decision recorded; a single record.

2018 5’UTR recruitment of eIF4GI or DAP5 drives cap-independent translation for a subset of human mRNAs other CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar 5’UTR recruitment of eIF4GI or DAP5 drives cap-independent translation for a subset of human mRNAs
year scholar 2018
kind scholar other
first author scholar Haizel

Citations

OpenAlex
none
Scholar
none

Match decisions

No decision recorded; a single record.

2018 D-Amino Acid Mediated Translation Arrest Is Modulated by the Identity of the Incoming Aminoacyl-tRNA Biochemistry article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholarCrossRef
title cv D-Amino Acid Mediated Translation Arrest Is Modulated by the Identity of the Incoming Aminoacyl-tRNAd -Amino Acid-Mediated Translation Arrest Is Modulated by the Identity of the Incoming Aminoacyl-tRNA
year cv 20182018
venue crossref BiochemistryBiochemistry
kind cv articlearticle
DOI crossref 10.1021/acs.biochem.8b0059510.1021/acs.biochem.8b00595
first author openalex Fleisher

Citations

OpenAlex
9
Scholar
11
DOI
10.1021/acs.biochem.8b00595
OpenAlex
W2803895723

Match decisions

No decision recorded; a single record.

2018 Observation and analysis of RAD51 nucleation dynamics at single-monomer resolution Methods in enzymology article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Observation and analysis of RAD51 nucleation dynamics at single-monomer resolution
year scholar 2018
venue scholar Methods in enzymology
kind scholar other
first author scholar Subramanyam

Citations

OpenAlex
none
Scholar
28

Match decisions

No decision recorded; a single record.

2018 Real-time structural dynamics of late steps in bacterial translation initiation visualized using time-resolved cryogenic electron microscopy bioRxiv other CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Real-time structural dynamics of late steps in bacterial translation initiation visualized using time-resolved cryogenic electron microscopy
year scholar 2018
venue scholar bioRxiv
kind scholar other
first author scholar Kaledhonkar

Citations

OpenAlex
none
Scholar
2

Match decisions

No decision recorded; a single record.

2018 Recruitment of human eIF4G1 or DAP5 to the 5’untranslated regions of a subset of cellular mRNAs drives cap-independent translation bioRxiv other CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Recruitment of human eIF4G1 or DAP5 to the 5’untranslated regions of a subset of cellular mRNAs drives cap-independent translation
year scholar 2018
venue scholar bioRxiv
kind scholar other
first author scholar Haizel

Citations

OpenAlex
none
Scholar
1

Match decisions

No decision recorded; a single record.

2017 Abstract A17: Probing a translational switch involved in tumor angiogenesis Cancer Research article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Abstract A17: Probing a translational switch involved in tumor angiogenesis
year scholar 2017
venue scholar Cancer Research
kind scholar other
first author scholar Ramachandran

Citations

OpenAlex
none
Scholar
none

Match decisions

No decision recorded; a single record.

2017 A conformational switch in initiation factor 2 controls the fidelity of translation initiation in bacteria Nature Communications article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar A conformational switch in initiation factor 2 controls the fidelity of translation initiation in bacteria
year scholar 2017
venue scholar Nature Communications
kind scholar other
first author scholar Caban

Citations

OpenAlex
none
Scholar
37

Match decisions

No decision recorded; a single record.

2017 Survivor: Ribosome Edition The EMBO Journal article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Survivor: Ribosome Edition
year scholar 2017
venue scholar The EMBO Journal
kind scholar other
first author scholar Gonzalez

Citations

OpenAlex
none
Scholar
1

Match decisions

No decision recorded; a single record.

2016 Precisely and accurately inferring single-molecule rate constants Methods in enzymology article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Precisely and accurately inferring single-molecule rate constants
year scholar 2016
venue scholar Methods in enzymology
kind scholar other
first author scholar Kinz-Thompson

Citations

OpenAlex
none
Scholar
39

Match decisions

No decision recorded; a single record.

2016 Probing DNA Conformational Changes in Real Time Using Single-Molecule Electronic Sensors Based on Carbon Nanotube Field-Effect Transistors Electrochemical Society Meeting Abstracts article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Probing DNA Conformational Changes in Real Time Using Single-Molecule Electronic Sensors Based on Carbon Nanotube Field-Effect Transistors
year scholar 2016
venue scholar Electrochemical Society Meeting Abstracts
kind scholar other
first author scholar Bouilly

Citations

OpenAlex
none
Scholar
none

Match decisions

No decision recorded; a single record.

2016 Single-molecule reaction chemistry in patterned nanowells Nano letters article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Single-molecule reaction chemistry in patterned nanowells
year scholar 2016
venue scholar Nano letters
kind scholar other
first author scholar Bouilly

Citations

OpenAlex
none
Scholar
72

Match decisions

No decision recorded; a single record.

2015 A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation Elife article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation
year scholar 2015
venue scholar Elife
kind scholar other
first author scholar Ruehle

Citations

OpenAlex
none
Scholar
38

Match decisions

No decision recorded; a single record.

2015 Protein synthesis during cellular quiescence is inhibited by phosphorylation of a translational elongation factor Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Protein synthesis during cellular quiescence is inhibited by phosphorylation of a translational elongation factor
year scholar 2015
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Pereira

Citations

OpenAlex
none
Scholar
83

Match decisions

No decision recorded; a single record.

2015 Quantitative connection between ensemble thermodynamics and single-molecule kinetics: a case study using cryogenic electron microscopy and single-molecule fluorescence … The Journal of Physical Chemistry B article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Quantitative connection between ensemble thermodynamics and single-molecule kinetics: a case study using cryogenic electron microscopy and single-molecule fluorescence …
year scholar 2015
venue scholar The Journal of Physical Chemistry B
kind scholar other
first author scholar Kinz-Thompson

Citations

OpenAlex
none
Scholar
20

Match decisions

No decision recorded; a single record.

2015 Ribosomal initiation complex-driven changes in the stability and dynamics of initiation factor 2 regulate the fidelity of translation initiation Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Ribosomal initiation complex-driven changes in the stability and dynamics of initiation factor 2 regulate the fidelity of translation initiation
year scholar 2015
venue scholar Journal of molecular biology
kind scholar other
first author scholar Wang

Citations

OpenAlex
none
Scholar
44

Match decisions

No decision recorded; a single record.

2015 Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data BMC bioinformatics article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data
year scholar 2015
venue scholar BMC bioinformatics
kind scholar other
first author scholar Greenfeld

Citations

OpenAlex
none
Scholar
11

Match decisions

No decision recorded; a single record.

2015 The emerging role of rectified thermal fluctuations in initiator aa-tRNA-and start codon selection during translation initiation Biochimie article CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The emerging role of rectified thermal fluctuations in initiator aa-tRNA-and start codon selection during translation initiation
year scholar 2015
venue scholar Biochimie
kind scholar other
first author scholar Caban

Citations

OpenAlex
none
Scholar
19

Match decisions

No decision recorded; a single record.

2015 The Ribosome Can Discriminate the Chirality of Amino Acids Within Its Peptidyl Transferase Center Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholarCrossRef
title cv The Ribosome Can Discriminate the Chirality of Amino Acids Within Its Peptidyl Transferase CenterThe ribosome can discriminate the chirality of amino acids within its peptidyl-transferase center
year cv 20152015
venue crossref Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences
kind cv articlearticle
DOI crossref 10.1073/pnas.142471211210.1073/pnas.1424712112
first author openalex Englander

Citations

OpenAlex
96
Scholar
111
DOI
10.1073/pnas.1424712112
OpenAlex
W2115028178

Match decisions

No decision recorded; a single record.

2015 Translation initiation factor 3 regulates switching between different modes of ribosomal subunit joining Journal of molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Translation initiation factor 3 regulates switching between different modes of ribosomal subunit joining
year scholar 2015
venue scholar Journal of molecular biology
kind scholar other
first author scholar MacDougall

Citations

OpenAlex
none
Scholar
53

Match decisions

No decision recorded; a single record.

2014 A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation
year scholar 2014
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Kim

Citations

OpenAlex
none
Scholar
130

Match decisions

No decision recorded; a single record.

2014 Deoxypolypeptides bind and cleave RNA Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar Deoxypolypeptides bind and cleave RNA
year scholar 2014
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Cheng

Citations

OpenAlex
none
Scholar
14

Match decisions

No decision recorded; a single record.

2014 EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics Nature structural & molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics
year scholar 2014
venue scholar Nature structural & molecular biology
kind scholar other
first author scholar Chen

Citations

OpenAlex
none
Scholar
121

Match decisions

No decision recorded; a single record.

2014 smFRET studies of the ‘encounter’complexes and subsequent intermediate states that regulate the selectivity of ligand binding FEBS letters article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar smFRET studies of the ‘encounter’complexes and subsequent intermediate states that regulate the selectivity of ligand binding
year scholar 2014
venue scholar FEBS letters
kind scholar other
first author scholar Kinz-Thompson

Citations

OpenAlex
none
Scholar
16

Match decisions

No decision recorded; a single record.

2014 The ABC-F protein EttA gates ribosome entry into the translation elongation cycle Nature structural & molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The ABC-F protein EttA gates ribosome entry into the translation elongation cycle
year scholar 2014
venue scholar Nature structural & molecular biology
kind scholar other
first author scholar Boël

Citations

OpenAlex
none
Scholar
168

Match decisions

No decision recorded; a single record.

2014 The ribosome uses cooperative conformational changes to maximize and regulate the efficiency of translation Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The ribosome uses cooperative conformational changes to maximize and regulate the efficiency of translation
year scholar 2014
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Ning

Citations

OpenAlex
none
Scholar
55

Match decisions

No decision recorded; a single record.

2014 The structural dynamics of translation initiation (109.1) The FASEB Journal 28 article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

FieldCVOpenAlexScholar
title scholar The structural dynamics of translation initiation (109.1)
year scholar 2014
venue scholar The FASEB Journal
kind scholar other
first author scholar Elvekrog

Citations

OpenAlex
none
Scholar
none

Match decisions

No decision recorded; a single record.

2013 Conformational selection of translation initiation factor 3 signals proper substrate selection Nature structural & molecular biology article journal CV OA GS Scholar only

CV span

Not in the CV.

Fields by source

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title scholar Conformational selection of translation initiation factor 3 signals proper substrate selection
year scholar 2013
venue scholar Nature structural & molecular biology
kind scholar other
first author scholar Elvekrog

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2013 Reconstructing kinetic pathways from single-molecule FRET experiments using Bayesian inference APS March Meeting Abstracts 2013, Y42 article journal CV OA GS Scholar only

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title scholar Reconstructing kinetic pathways from single-molecule FRET experiments using Bayesian inference
year scholar 2013
venue scholar APS March Meeting Abstracts
kind scholar other
first author scholar van de Meent

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2013 Robustly passivated, gold nanoaperture arrays for single-molecule fluorescence microscopy Acs Nano article journal CV OA GS Scholar only

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title scholar Robustly passivated, gold nanoaperture arrays for single-molecule fluorescence microscopy
year scholar 2013
venue scholar Acs Nano
kind scholar other
first author scholar Kinz-Thompson

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39

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2011 A microfluidic approach for investigating the temperature dependence of biomolecular activity with single-molecule resolution Lab on a Chip article journal CV OA GS Scholar only

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title scholar A microfluidic approach for investigating the temperature dependence of biomolecular activity with single-molecule resolution
year scholar 2011
venue scholar Lab on a Chip
kind scholar other
first author scholar Wang

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35

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2011 Biological mechanisms, one molecule at a time Genes & development article journal CV OA GS Scholar only

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title scholar Biological mechanisms, one molecule at a time
year scholar 2011
venue scholar Genes & development
kind scholar other
first author scholar Tinoco

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175

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2011 Characterization of the Stereoselectivity of Protein Synthesis by the Escherichia coli Translational Machinery The Stereoselectivity of the Escherichia coli Protein Synthesis Machinery other CV OA GS Scholar only

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title scholar Characterization of the Stereoselectivity of Protein Synthesis by the Escherichia coli Translational Machinery
year scholar 2011
venue scholar The Stereoselectivity of the Escherichia coli Protein Synthesis Machinery
kind scholar other
first author scholar Avins

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2011 Exploring the structural dynamics of the translational machinery using single-molecule fluorescence resonance energy transfer Ribosomes: Structure, Function, and Dynamics other CV OA GS Scholar only

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title scholar Exploring the structural dynamics of the translational machinery using single-molecule fluorescence resonance energy transfer
year scholar 2011
venue scholar Ribosomes: Structure, Function, and Dynamics
kind scholar other
first author scholar MacDougall

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3

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2011 In vitro and in vivo single-molecule fluorescence imaging of ribosome-catalyzed protein synthesis Current opinion in chemical biology article journal CV OA GS Scholar only

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title scholar In vitro and in vivo single-molecule fluorescence imaging of ribosome-catalyzed protein synthesis
year scholar 2011
venue scholar Current opinion in chemical biology
kind scholar other
first author scholar Perez

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29

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2011 Label-free field-effect-based single-molecule detection of DNA hydridization kinetics other CV OA GS Scholar only

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title scholar Label-free field-effect-based single-molecule detection of DNA hydridization kinetics
year scholar 2011
kind scholar other
first author scholar Sorgenfrei

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2011 Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor Nature nanotechnology article journal CV OA GS Scholar only

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title scholar Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor
year scholar 2011
venue scholar Nature nanotechnology
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first author scholar Sorgenfrei

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523

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2011 Molecular imaging: sine labore nihil Current Opinion in Chemical Biology article journal CV OA GS Scholar only

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title scholar Molecular imaging: sine labore nihil
year scholar 2011
venue scholar Current Opinion in Chemical Biology
kind scholar other
first author scholar Schepartz

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11

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2011 Selective biomolecular nanoarrays for parallel single-molecule investigations Journal of the American Chemical Society article journal CV OA GS Scholar only

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title scholar Selective biomolecular nanoarrays for parallel single-molecule investigations
year scholar 2011
venue scholar Journal of the American Chemical Society
kind scholar other
first author scholar Palma

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52

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2011 Transfer RNA–mediated regulation of ribosome dynamics during protein synthesis Nature structural & molecular biology article journal CV OA GS Scholar only

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title scholar Transfer RNA–mediated regulation of ribosome dynamics during protein synthesis
year scholar 2011
venue scholar Nature structural & molecular biology
kind scholar other
first author scholar Fei

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74

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2010 A highly purified, fluorescently labeled in vitro translation system for single-molecule studies of protein synthesis Methods in enzymology article CV OA GS Scholar only

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title scholar A highly purified, fluorescently labeled in vitro translation system for single-molecule studies of protein synthesis
year scholar 2010
venue scholar Methods in enzymology
kind scholar other
first author scholar Fei

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72

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2010 Graphical models for inferring single molecule dynamics BMC bioinformatics version 2010 Graphical models for inferring single molecule dynamics article journal CV OA GS Scholar only

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title scholar Graphical models for inferring single molecule dynamics
year scholar 2010
venue scholar BMC bioinformatics
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first author scholar Bronson

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23

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2010 Structure and dynamics of a processive Brownian motor: the translating ribosome Annual review of biochemistry article journal CV OA GS Scholar only

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title scholar Structure and dynamics of a processive Brownian motor: the translating ribosome
year scholar 2010
venue scholar Annual review of biochemistry
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first author scholar Frank

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2009 Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

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title scholar Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation
year scholar 2009
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Fei

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2009 Natural Amino Acids Do Not Require Their Native tRNAs for Efficient Selection by the Ribosome Nature Chemical Biology article journal CV OA GS Scholar only

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FieldCVOpenAlexScholarCrossRef
title cv Natural Amino Acids Do Not Require Their Native tRNAs for Efficient Selection by the RibosomeNatural amino acids do not require their native tRNAs for efficient selection by the ribosome
year cv 20092009
venue crossref Nature Chemical BiologyNature Chemical Biology
kind cv articlearticle
DOI crossref 10.1038/nchembio.25510.1038/nchembio.255
first author openalex Effraim

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42
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52
DOI
10.1038/nchembio.255
OpenAlex
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2009 Translation factors direct intrinsic ribosome dynamics during translation termination and ribosome recycling Nature structural & molecular biology article journal CV OA GS Scholar only

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title scholar Translation factors direct intrinsic ribosome dynamics during translation termination and ribosome recycling
year scholar 2009
venue scholar Nature structural & molecular biology
kind scholar other
first author scholar Sternberg

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100

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2008 Navigating the RNA folding landscape Nature chemical biology article journal CV OA GS Scholar only

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title scholar Navigating the RNA folding landscape
year scholar 2008
venue scholar Nature chemical biology
kind scholar other
first author scholar Gonzalez

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2

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2007 Conformational dynamics during termination of protein synthesis ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY article CV OA GS Scholar only

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title scholar Conformational dynamics during termination of protein synthesis
year scholar 2007
venue scholar ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
kind scholar other
first author scholar Sternberg

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2007 Thiostrepton inhibition of tRNA delivery to the ribosome Rna article CV OA GS Scholar only

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title scholar Thiostrepton inhibition of tRNA delivery to the ribosome
year scholar 2007
venue scholar Rna
kind scholar other
first author scholar Gonzalez

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64

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2005 Site-specific labeling of the ribosome for single-molecule spectroscopy Nucleic acids research article journal CV OA GS Scholar only

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title scholar Site-specific labeling of the ribosome for single-molecule spectroscopy
year scholar 2005
venue scholar Nucleic acids research
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first author scholar Dorywalska

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170

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2004 tRNA dynamics on the ribosome during translation Proceedings of the National Academy of Sciences article journal CV OA GS Scholar only

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title scholar tRNA dynamics on the ribosome during translation
year scholar 2004
venue scholar Proceedings of the National Academy of Sciences
kind scholar other
first author scholar Blanchard

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635

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2004 tRNA selection and kinetic proofreading in translation Nature structural & molecular biology article journal CV OA GS Scholar only

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title scholar tRNA selection and kinetic proofreading in translation
year scholar 2004
venue scholar Nature structural & molecular biology
kind scholar other
first author scholar Blanchard

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2002 Identification characterization of metal ion binding sites in RNA Methods in enzymology article CV OA GS Scholar only

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title scholar Identification characterization of metal ion binding sites in RNA
year scholar 2002
venue scholar Methods in enzymology
kind scholar other
first author scholar Gonzalez

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69

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1999 Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudokno Journal of molecular biology article journal CV OA GS Scholar only

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title scholar Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudokno
year scholar 1999
venue scholar Journal of molecular biology
kind scholar other
first author scholar Gonzalez

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136

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315 Structural Dynamics of Ribosome Subunit Association Studied by Mixing-Spraying Time-Resolved Cryogenic Electron Microscopy Novel Developments in Cryo-EM of Biological Molecules: Resolution in Time other CV OA GS Scholar only

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title scholar 315 Structural Dynamics of Ribosome Subunit Association Studied by Mixing-Spraying Time-Resolved Cryogenic Electron Microscopy
venue scholar Novel Developments in Cryo-EM of Biological Molecules: Resolution in Time …
kind scholar other
first author scholar Chen

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Translation factors direct intrinsic ribosome dynamics during termination and ribosome recycling Nature Structural & Molecular Biology other journal CV OA GS Scholar only

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title scholar Translation factors direct intrinsic ribosome dynamics during termination and ribosome recycling
venue scholar Nature Structural & Molecular Biology
kind scholar other
first author scholar Sternberg

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1

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In progress

1 item in progress, under review, forthcoming or a working paper · not counted as publications

2018 Fidelity of bacterial translation initiation: a stochastic kinetic model arXiv preprint working paper CV OA GS Scholar only

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title scholar Fidelity of bacterial translation initiation: a stochastic kinetic model
year scholar 2018
venue scholar arXiv preprint arXiv:1802.02066
kind scholar other
first author scholar Ghanti

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Not counted

5 items · dissertations, talks, media, datasets · listed, not counted as publications

2025 GRADUATE SCHOOL OF ARTS AND SCIENCES PHD CONVOCATION 2025 Columbia University thesis not counted CV OA GS Scholar only

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title scholar GRADUATE SCHOOL OF ARTS AND SCIENCES PHD CONVOCATION 2025
year scholar 2025
venue scholar Columbia University
kind scholar other
first author scholar Gonzalez

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2013 Hierarchically-coupled hidden Markov models for learning kinetic rates from single-molecule data International Conference on Machine Learning presentation not counted CV OA GS Scholar only

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title scholar Hierarchically-coupled hidden Markov models for learning kinetic rates from single-molecule data
year scholar 2013
venue scholar International Conference on Machine Learning
kind scholar other
first author scholar Meent

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40

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Coupling of Ribosomal L1 Stalk incomplete not counted CV OA GS Scholar only

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title scholar Coupling of Ribosomal L1 Stalk
kind scholar other
first author scholar Fei

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none

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https://www. jbc. org/cgi/doi/10.1074/jbc. RA120. 013678 The latest version is at incomplete not counted CV OA GS Scholar only

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title scholar https://www. jbc. org/cgi/doi/10.1074/jbc. RA120. 013678 The latest version is at
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first author scholar Haizel

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Supporting Information: Increasing the time resolution of single-molecule experiments with Bayesian inference incomplete not counted CV OA GS Scholar only

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title scholar Supporting Information: Increasing the time resolution of single-molecule experiments with Bayesian inference
kind scholar other
first author scholar Kinz-Thompson

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