Publications

1999 Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudokno Ruben L Gonzalez Jr · Journal of molecular biology · Scholar only 136 2002 Identification characterization of metal ion binding sites in RNA Ruben L Gonzalez Jr · Methods in enzymology · Scholar only 69 2004 tRNA dynamics on the ribosome during translation Ruben L Gonzalez Jr · Proceedings of the National Academy of Sciences · Scholar only 635 2004 tRNA selection and kinetic proofreading in translation Ruben L Gonzalez Jr · Nature structural & molecular biology · Scholar only 589 2005 Site-specific labeling of the ribosome for single-molecule spectroscopy Ruben L Gonzalez Jr · Nucleic acids research · Scholar only 170 2007 Conformational dynamics during termination of protein synthesis Ruben L Gonzalez Jr · ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY · Scholar only — 2007 Thiostrepton inhibition of tRNA delivery to the ribosome Ruben L Gonzalez Jr · Rna · Scholar only 64 2008 Navigating the RNA folding landscape Ruben L Gonzalez Jr · Nature chemical biology · Scholar only 2 2009 Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation Ruben L Gonzalez Jr · Proceedings of the National Academy of Sciences · Scholar only 174 2009 Natural Amino Acids Do Not Require Their Native tRNAs for Efficient Selection by the Ribosome Ruben L Gonzalez Jr · Nature Chemical Biology · Scholar only 52 2009 Translation factors direct intrinsic ribosome dynamics during translation termination and ribosome recycling Ruben L Gonzalez Jr · Nature structural & molecular biology · Scholar only 100 2010 A highly purified, fluorescently labeled in vitro translation system for single-molecule studies of protein synthesis Ruben L Gonzalez Jr · Methods in enzymology · Scholar only 72 2010 Graphical models for inferring single molecule dynamics Ruben L Gonzalez Jr · BMC bioinformatics · Scholar only 23 2010 Structure and dynamics of a processive Brownian motor: the translating ribosome Ruben L Gonzalez Jr · Annual review of biochemistry · Scholar only 306 2011 A microfluidic approach for investigating the temperature dependence of biomolecular activity with single-molecule resolution Ruben L Gonzalez Jr · Lab on a Chip · Scholar only 35 2011 Biological mechanisms, one molecule at a time Ruben L Gonzalez Jr · Genes & development · Scholar only 175 2011 Characterization of the Stereoselectivity of Protein Synthesis by the Escherichia coli Translational Machinery Ruben L Gonzalez Jr · The Stereoselectivity of the Escherichia coli Protein Synthesis Machinery · Scholar only — 2011 Exploring the structural dynamics of the translational machinery using single-molecule fluorescence resonance energy transfer Ruben L Gonzalez Jr · Ribosomes: Structure, Function, and Dynamics · Scholar only 3 2011 In vitro and in vivo single-molecule fluorescence imaging of ribosome-catalyzed protein synthesis Ruben L Gonzalez Jr · Current opinion in chemical biology · Scholar only 29 2011 Label-free field-effect-based single-molecule detection of DNA hydridization kinetics Ruben L Gonzalez Jr · Scholar only — 2011 Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor Ruben L Gonzalez Jr · Nature nanotechnology · Scholar only 523 2011 Molecular imaging: sine labore nihil Ruben L Gonzalez Jr · Current Opinion in Chemical Biology · Scholar only 11 2011 Selective biomolecular nanoarrays for parallel single-molecule investigations Ruben L Gonzalez Jr · Journal of the American Chemical Society · Scholar only 52 2011 Transfer RNA–mediated regulation of ribosome dynamics during protein synthesis Ruben L Gonzalez Jr · Nature structural & molecular biology · Scholar only 74 2013 Conformational selection of translation initiation factor 3 signals proper substrate selection Ruben L Gonzalez Jr · Nature structural & molecular biology · Scholar only 77 2013 Reconstructing kinetic pathways from single-molecule FRET experiments using Bayesian inference Ruben L Gonzalez Jr · APS March Meeting Abstracts 2013, Y42 · Scholar only — 2013 Robustly passivated, gold nanoaperture arrays for single-molecule fluorescence microscopy Ruben L Gonzalez Jr · Acs Nano · Scholar only 39 2014 A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation Ruben L Gonzalez Jr · Proceedings of the National Academy of Sciences · Scholar only 130 2014 Deoxypolypeptides bind and cleave RNA Ruben L Gonzalez Jr · Proceedings of the National Academy of Sciences · Scholar only 14 2014 EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics Ruben L Gonzalez Jr · Nature structural & molecular biology · Scholar only 121 2014 smFRET studies of the ‘encounter’complexes and subsequent intermediate states that regulate the selectivity of ligand binding Ruben L Gonzalez Jr · FEBS letters · Scholar only 16 2014 The ABC-F protein EttA gates ribosome entry into the translation elongation cycle Ruben L Gonzalez Jr · Nature structural & molecular biology · Scholar only 168 2014 The ribosome uses cooperative conformational changes to maximize and regulate the efficiency of translation Ruben L Gonzalez Jr · Proceedings of the National Academy of Sciences · Scholar only 55 2014 The structural dynamics of translation initiation (109.1) Ruben L Gonzalez Jr · The FASEB Journal 28 · Scholar only — 2015 A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation Ruben L Gonzalez Jr · Elife · Scholar only 38 2015 Protein synthesis during cellular quiescence is inhibited by phosphorylation of a translational elongation factor Ruben L Gonzalez Jr · Proceedings of the National Academy of Sciences · Scholar only 83 2015 Quantitative connection between ensemble thermodynamics and single-molecule kinetics: a case study using cryogenic electron microscopy and single-molecule fluorescence … Ruben L Gonzalez Jr · The Journal of Physical Chemistry B · Scholar only 20 2015 Ribosomal initiation complex-driven changes in the stability and dynamics of initiation factor 2 regulate the fidelity of translation initiation Ruben L Gonzalez Jr · Journal of molecular biology · Scholar only 44 2015 Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data Ruben L Gonzalez Jr · BMC bioinformatics · Scholar only 11 2015 The emerging role of rectified thermal fluctuations in initiator aa-tRNA-and start codon selection during translation initiation Ruben L Gonzalez Jr · Biochimie · Scholar only 19 2015 The Ribosome Can Discriminate the Chirality of Amino Acids Within Its Peptidyl Transferase Center Ruben L Gonzalez Jr · Proceedings of the National Academy of Sciences · Scholar only 111 2015 Translation initiation factor 3 regulates switching between different modes of ribosomal subunit joining Ruben L Gonzalez Jr · Journal of molecular biology · Scholar only 53 2016 Precisely and accurately inferring single-molecule rate constants Ruben L Gonzalez Jr · Methods in enzymology · Scholar only 39 2016 Probing DNA Conformational Changes in Real Time Using Single-Molecule Electronic Sensors Based on Carbon Nanotube Field-Effect Transistors Ruben L Gonzalez Jr · Electrochemical Society Meeting Abstracts · Scholar only — 2016 Single-molecule reaction chemistry in patterned nanowells Ruben L Gonzalez Jr · Nano letters · Scholar only 72 2017 Abstract A17: Probing a translational switch involved in tumor angiogenesis Ruben L Gonzalez Jr · Cancer Research · Scholar only — 2017 A conformational switch in initiation factor 2 controls the fidelity of translation initiation in bacteria Ruben L Gonzalez Jr · Nature Communications · Scholar only 37 2017 Survivor: Ribosome Edition Ruben L Gonzalez Jr · The EMBO Journal · Scholar only 1 2018 5’UTR recruitment of eIF4GI or DAP5 drives cap-independent translation for a subset of human mRNAs Ruben L Gonzalez Jr · Scholar only — 2018 D-Amino Acid Mediated Translation Arrest Is Modulated by the Identity of the Incoming Aminoacyl-tRNA Ruben L Gonzalez Jr · Biochemistry · Scholar only 11