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2025 Genome-wide profiling of tRNA modifications by Induro-tRNAseq reveals coordinated changes Ralph Kleiner · Nature Communications 27 2024 Drugging the Epitranscriptome Ralph Kleiner · Methods and Principles in Medicinal Chemistry 0 2024 Global characterization of RNA modifying enzymes with RNA-mediated activity-based protein profiling (RNABPP) Ralph Kleiner · Methods in enzymology on CD-ROM/Methods in enzymology 0 2024 Introduction to ‘The Epitranscriptome’ Ralph Kleiner · RSC Chemical Biology 0 2024 Sequence- and Structure-Specific tRNA Dihydrouridylation by hDUS2 Ralph Kleiner · ACS Central Science 4 2024 The impact of epitranscriptomic modifications on liver disease Ralph Kleiner · Trends in Endocrinology & Metabolism 12 2023 Chemical approaches to investigate post-transcriptional RNA regulation Ralph Kleiner · ACS Chemical Biology 1 2023 Chemoproteomic approaches to studying RNA modification-associated proteins Ralph Kleiner · Accounts of Chemical Research 12 2023 Chemoproteomic profiling of 8-oxoguanosine-sensitive RNA-protein interactions Ralph Kleiner · Biochemistry 2 2023 Global Discovery of Covalent Modulators of Ribonucleoprotein Granules Ralph Kleiner · Journal of the American Chemical Society 23 2023 Inhibition of nucleolar transcription by oxaliplatin involves ATM/ATR kinase signaling Ralph Kleiner · Cell Chemical Biology 26 2023 Profiling dynamic RNA-protein interactions using small molecule-induced RNA editing Ralph Kleiner · Nature Chemical Biology 30 2023 Tracking chromatin state changes using nanoscale photo-proximity labeling Ralph Kleiner · Nature 130 2023 Viscoelasticity and advective flow of RNA underlies nucleolar form and function Ralph Kleiner · Molecular Cell 124 2022 Chemical Method to Sequence 5-Formylcytosine on RNA Ralph Kleiner · ACS Chemical Biology 22 2022 Live-cell RNA imaging with metabolically incorporated fluorescent nucleosides Ralph Kleiner · Journal of the American Chemical Society 49 2022 Reactivity-dependent profiling of RNA 5-methylcytidine dioxygenases Ralph Kleiner · Nature Communications 82 2021 Activity-based RNA-modifying enzyme probing reveals DUS3L-mediated dihydrouridylation Ralph Kleiner · Nature Chemical Biology 61 2021 A neural m6A/Ythdf pathway is required for learning and memory in Drosophila Ralph Kleiner · Nature Communications 93 2021 Interrogating the Transcriptome with Metabolically Incorporated Ribonucleosides Ralph Kleiner · Molecular Omics 18 2021 Mechanisms of Epitranscriptomic Gene Regulation Ralph Kleiner · Biopolymers 29 2020 Cell- and Polymerase-Selective Metabolic Labeling of Cellular RNA with 2’-Azidocytidine Ralph Kleiner · Journal of the American Chemical Society 50 2020 YTHDF2 Recognition of N1-methyladenosine (m1A)-modified RNA Is Associated with Transcript Destabilization Ralph Kleiner · ACS Chemical Biology 119 2019 A Metabolic Engineering Approach to Incorporate Modified Pyrimidine Nucleosides into Cellular RNA Ralph Kleiner · Journal of the American Chemical Society 55 2019 High-throughput approaches to profile protein-RNA interactions Ralph Kleiner · Current Opinion in Chemical Biology 57 2019 In vitro selection with a site-specifically modified RNA library reveals the binding preferences of N6-methyladenosine (m6A) reader proteins Ralph Kleiner · Biochemistry 25 2018 A Chemical Proteomics Approach to Reveal Direct Protein-Protein Interactions in Living Cells Ralph Kleiner · Cell Chemical Biology 79 2018 A Photocrosslinking-Based RNA Chemical Proteomics Approach to Profile m6A-Regulated Protein-RNA Interactions Ralph Kleiner · Current Protocols in Nucleic Acid Chemistry 2 2018 Reading the RNA Code Ralph Kleiner · Biochemistry 7 2017 RNA Chemical Proteomics Reveals the N6-Methyladenosine (m6A)-Regulated Protein-RNA Interactome Ralph Kleiner · Journal of the American Chemical Society 265 2016 Mutations in Human Tubulin Proximal to the Kinesin-Binding Site Alter Dynamic Instability at Microtubule Plus- and Minus-Ends Ralph Kleiner · Developmental Cell 114 2016 Structural and Biochemical Basis for Intracellular Kinase Inhibition by Src-specific Peptidic Macrocycles Ralph Kleiner · Cell Chemical Biology 15 2015 Chemical Proteomics Reveals a γH2AX-53BP1 Interaction in the DNA Damage Response Ralph Kleiner · Nature Chemical Biology 110 2014 Anti-Diabetic Activity of Insulin-Degrading Enzyme Inhibitors Mediated by Multiple Hormones Ralph Kleiner · Nature 259 2013 Bumping Up Kinase Activity with an ATP-Derived Neo-Substrate Ralph Kleiner · Cell 2 2013 Site-Specific Chemistry on the Microtubule Polymer Ralph Kleiner · Journal of the American Chemical Society 12 2012 Highly specific, bisubstrate-competitive Src inhibitors from DNA-templated macrocycles Ralph Kleiner · Nature Chemical Biology 62 2011 Small-Molecule Discovery from DNA-Encoded Chemical Libraries Ralph Kleiner · Chemical Society Reviews 236 2010 An In Vitro Translation, Selection and Amplification System for Peptide Nucleic Acid Ralph Kleiner · Nature Chemical Biology 90 2010 In Vitro Selection of a DNA-Templated Small-Molecule Library Reveals a Class of Macrocyclic Kinase Inhibitors Ralph Kleiner · Journal of the American Chemical Society 157 2008 DNA-Templated Polymerization of Side-Chain-Functionalized Peptide Nucleic Acid Aldehydes Ralph Kleiner · Journal of the American Chemical Society 150 2005 An Intein-Based Genetic Selection Enables Construction of a High-Quality Library of Binary Patterned De Novo Sequences Ralph Kleiner · Protein Engineering, Design and Selection 26 Macrocyclic insulin-degrading enzyme (IDE) inhibitors and uses thereof Ralph Kleiner · U.S. Patent No. 9,610,322 · needs review Macrocyclic kinase inhibitors and uses thereof Ralph Kleiner · U.S. Patent No. 8,975,232 · needs review
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2025 · article · journal

Genome-wide profiling of tRNA modifications by Induro-tRNAseq reveals coordinated changes

Nature Communications · Ralph Kleiner

in CV in OpenAlex
noneScholar citations
27OpenAlex citations

From the CV

lines 60–63 · published

1. “Genome-wide profiling of tRNA modifications by Induro-tRNAseq reveals coordinated changes”Nakano, Y.; Gamper, H.; McGuigan, H.; Maharjan, S.; Li, J.; Sun, Z.; Yigit, E.; Grunberg, S.;Krishnan, K.; Li, N.S.; Piccirilli, J.A.; Kleiner, R.E.; Nichols, N.; Gregory, B.D.; Hou, Y.M. Nat.Commun. 16, 1047 (2025).

Peer reviewed
yes
First author
Nakano
Co-authors
Nakano, Y.; Gamper, H.; McGuigan, H.; Maharjan, S.; Li, J.; Sun, Z.; Yigit, E.; Grunberg, S.; Krishnan, K.; Li, N.S.; Piccirilli, J.A.; Kleiner, R.E.; Nichols, N.; Gregory, B.D.; Hou, Y.M.
Subfield
other
Method
none
Invited
none
Publisher
none
Reprint or translation
none
DOI
10.1038/s41467-025-56348-1
OpenAlex
W4406833800

Where each field came from

FieldCVOpenAlexScholarCrossRef
title Genome-wide profiling of tRNA modifications by Induro-tRNAseq reveals coordinated changes (used)Genome-wide profiling of tRNA modifications by Induro-tRNAseq reveals coordinated changes
year 2025 (used)2025
venue Nat. Commun.Nature CommunicationsNature Communications (used)
kind article (used)article
DOI 10.1038/s41467-025-56348-1 (used)10.1038/s41467-025-56348-1
first author NakanoNakano (used)

The value in bold is the one the record uses.

How the records were joined

  • doi merged · 1.00 · Run 18