Trackademia

Welcome to Trackademia

The idea behind Trackademia is to build on existing academic databases like Google Scholar and OpenAlex so that you can trust the data and use it for whatever you want. That comes down to two things.

More data, and more ways to use it. We aggregate publication data from every major source into a single dataset and add information pulled from faculty CVs. Then we let you slice it however you want: choose which sources to build from, write your own formulas, weight journals, adjust for department size.

More accurate, and honest about where it isn’t. We focus on a smaller set of schools so we can verify everything carefully. Faculty lists come from department websites rather than being inferred from publication records, so we know who should be in the data before we go looking. When we can’t find data on someone, we record the gap instead of dropping them. Every number comes with a coverage rate you can check against ground truth.

Everything in Trackademia is built from seven units. AI merges duplicate records across sources and tags each publication so these categories hold up:

  • Publication — citation counts, authors, journal, peer review status, and more
  • Publication group — versions of the same work combined into one entity, such as a working paper and the article it became
  • Academic
  • Department
  • University
  • Field
  • Journal

There are two modes. In Database mode you browse the underlying records and filter by any of the seven units. In Analytics mode you get graphs and comparisons, and you switch views to compare two departments, compare one department against the average of the others, or see them all at once. Tabs let you focus on a particular level of the data.

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Journal

Proceedings of the National Academy of Sciences

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Citation weight

TierB
Weight in force
Weightingoff

Weight inputs

Each figure with its percentile among the ranked journals. A is the median, over the academics with a work here, of that academic’s citations to the works this site counts for them - never a Google Scholar profile total. Over every academic of this field, all years, whatever the filters select.

A · academics’ median11,736.0 · 45%
B · citations per work217.1 · 81%
N · works425 · 98%
P · academics91 · 99%
Formula result0.968

From this institution

Under these filters. A work with no citation count is unknown here, never a zero.

Works424
Citations86,360 over 398 of 424 works
Citations per counted work217.0
Weighted citations
Academics91
Departments8
First seen1974

Works placed per year

424 of these 424 works carry a year; an undated work is in no year. Works placed, under these filters.

Departments publishing there 8

DepartmentWorks
Princeton Chemistry101
Harvard Chemistry93
Penn Chemistry66
Cornell Chemistry56
Columbia Chemistry44
Yale Chemistry41
Brown Chemistry16
Dartmouth Chemistry14

A work held by two departments counts once in each, so these add up to more than the works above.

Works placed there 424

YearTitleAcademicsCitations
2014The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibitionPamela Chang2,647
2007Copper-free click chemistry for dynamic in vivo imagingJeremy M. Baskin · Pamela Chang2,550
2005Potential energy functions for atomic-level simulations of water, and organic and biomolecular systems.William Jorgensen1,966
2004Electrical detection of single virusesXiaowei Zhuang1,789
1998Expressed Protein Ligation: A General Method For Protein EngineeringTom Muir1,642
2018Developing a Molecular Dynamics Force Field for Both Folded and Disordered Protein StatesPaul Robustelli1,183
2014Reactive cysteine persulfides and S-polythiolation regulate oxidative stress and redox signalingMing Xian1,080
2007Large-scale fluid/fluid phase separation of proteins and lipids in giant plasma membrane vesiclesBarbara A. Baird · Tobias Baumgart1,069
2003Visualizing infection of individual influenza virusesXiaowei Zhuang947
2010Attractive Non-Covalent Interactions in Asymmetric Catalysis: Links Between Enzymes and Small-Molecule CatalystsRobert Knowles945
2019Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expressionXiaowei Zhuang894
2010Copper-free click chemistry in living animalsJeremy M. Baskin · Pamela Chang873
2010Aquaporin-3 mediates hydrogen peroxide uptake to regulate downstream intracellular signalingChristopher J. Chang872
2013Hypoxic and Ras-transformed cells support growth by scavenging unsaturated fatty acids from lysophospholipidsJoshua Rabinowitz862
2016Optical magnetic detection of single-neuron action potentials using quantum defects in diamondHongkun Park858
2011Cobalt-Dithiolene Complexes for the Photocatalytic and Electrocatalytic Reduction of ProtonsPatrick Holland792
2011A General Strategy for the Evolution of Bond-Forming Enzymes Using Yeast DisplayDavid R. Liu758
2020Microbial tryptophan metabolites regulate gut barrier function via the aryl hydrocarbon receptorPamela Chang757
2016Efficient Delivery of Genome-Editing Proteins using Bioreducible Lipid NanoparticlesDavid R. Liu742
2000Rapid and General Profiling of Protease Specificity by Using Combinatorial Fluorogenic Substrate LibrariesJon Ellman740
2012Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme.Emily Balskus718
1993Engineering of stable and fast-folding sequences of model proteins.Eugene I. Shakhnovich694
2010Vertical silicon nanowires as a universal platform for delivering biomolecules into living cellsHongkun Park692
2016High-throughput single- cell gene expression profiling with multiplexed error-robust fluorescence in situ hybridization (MERFISH)Xiaowei Zhuang672
1999Structure-activity analysis of the thiolactone peptides from Staphylococcus aureus responsible for virulence.Tom Muir661
2005Planar-to-Tubular Structural Transition in Boron Clusters: B20 as the Embryo of Single-Walled Boron NanotubesLai-Sheng Wang650
2009Designer Disordered Materials With Large Complete Photonic Band GapsSalvatore Torquato650
2004tRNA dynamics on the ribosome during translationRuben L Gonzalez Jr635
2012Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probesXiaowei Zhuang614
2002Network of coupled promoting motions in enzyme catalysisSharon Hammes-Schiffer595
2017Nitric Oxide is an Obligate Bacterial Nitrification Intermediate Produced by Hydroxylamine OxidoreductaseKyle M. Lancaster591
2017Exceedingly Small Iron Oxide Nanoparticles as Positive MRI Contrast AgentsOu Chen577
2017Ab initio theory and modeling of waterRoberto Car540
2004Enantioselective organocatalytic construction of pyrroloindolines by a cascade addition–cyclization strategy: Synthesis of (–)-flustramine BDavid MacMillan534
2012A Novel Autophagy Inhibitor with Single Agent Antitumor Activity Reproduces the Phenotype of a Genetic Autophagy DeficiencyJeffrey D. Winkler498
2012Pyruvate kinase M2 promotes de novo serine synthesis to sustain mTORC1 activity and cell proliferationJoshua Rabinowitz488
2010In vivo imaging of hydrogen peroxide production in a murine tumor model with a chemoselective bioluminescent reporterChristopher J. Chang469
1994The Combinatorial Synthesis, and Chemical and Biological Evaluation of a 1,4-Benzodiazepine LibraryJon Ellman462
1999De Novo Amyloid Proteins From Designed Combinatorial LibrariesMichael Hecht461
1999Progress Towards the Evolution of an Organism with an Expanded Genetic CodeDavid R. Liu458
2006Evidence of Hollow Golden CagesLai-Sheng Wang451
2014Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imagingXiaowei Zhuang450
2006The Pathogen-Associated iroA Gene Cluster Mediates Bacterial Evasion of Lipocalin 2David R. Liu449
2003Watching proteins fold one molecule at a timeElizabeth Rhoades449
2001Crystal structure of the dimeric extracellular domain of human carbonic anhydrase XII, a bitopic membrane protein overexpressed in certain cancer tumor cellsDavid W. Christianson440
2016New type of Weyl semimetal with quadratic double Weyl fermionsSuyang Xu436
2002Bornyl diphosphate synthase: structure and strategy for carbocation manipulation by a terpenoid cyclaseDavid W. Christianson419
2012Phase separation and rotor self-assembly in active particle suspensionsAngelo Cacciuto415
2013Cell-trappable fluorescent probes for endogenous hydrogen sulfide signaling and imaging H2O2-dependent H2S productionChristopher J. Chang414
2005Crosslinking a lipid raft component triggers liquid ordered-liquid disordered phase separation in model plasma membranesBarbara A. Baird · Tobias Baumgart413
1995FcRI-mediated recruitment of p53/56lyn to detergent-resistant membrane domains accompanies cellular signalingBarbara A. Baird401
2008Multiplex Protein Assays Based on Real-Time Magnetic Nanotag SensingShouheng Sun384
1998NMR determination of the major solution conformation of a peptoid pentamer with chiral side chainsDale F. Mierke382
1995A test of lattice protein folding algorithms.Eugene I. Shakhnovich381
2000Rational Design of a Global Inhibitor of the Virulence Response in S.aureus, Based in Part Upon Localization of the Site of Inhibition to the Receptor-Histidine Kinase, AgrC.Tom Muir379
2007The identification of bacillaene, the product of the PksX megacomplex in Bacillus subtilisFrank C. Schroeder375
2016High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearingXiaowei Zhuang374
1996Kinetic discrimination in T-cell activation.Joshua Rabinowitz374
2002Topological determinants of protein foldingEugene I. Shakhnovich370
2009De Novo Design and in vivo Activity of Conformationally Restrained Antimicrobial Arylamide FoldamersJeffrey D. Winkler370
1995Periodicity of Polar and Non-Polar Amino Acids is the Major Determinant of Secondary Structure in Self-Assembling Oligomeric PeptidesMichael Hecht370
1999Ligand-induced conformational changes of single RNA moleculesXiaowei Zhuang367
2009Mammalian Cell Penetration, siRNA Transfection, and DNA Transfection by Supercharged ProteinsDavid R. Liu367
2005Physics and evolution of thermophilic adaptationEugene I. Shakhnovich364
2009A Superior Descriptor of Random Textures and Its Predictive CapacitySalvatore Torquato361
2006Conservation of the metabolomic response to starvation across two divergent microbesJoshua Rabinowitz352
1997Engineering a tRNA and Aminoacyl-tRNA Synthetase for the Site-Specific Incorporation of Unnatural Amino Acids into Proteins in VivoDavid R. Liu349
2015Hybrid bioinorganic approach to solar-to-chemical conversionChristopher J. Chang349
2001Structure of trichodiene synthase from Fusarium sporotrichioides provides mechanistic inferences on the terpene cyclization cascadeDavid W. Christianson348
2006Suppressing Brownian motion of individual biomolecules in solutionAdam Cohen347
2008Transcription factor MEF2C influences neural stem/progenitor cell differentiation and maturation in vivoMichael J. Ragusa342
2007Protein stability imposes limits on organism complexity and speed of molecular evolutionEugene I. Shakhnovich330
2009Slow Peptide Bond Formation by Proline and Other N-alkylamino Acids in TranslationVirginia W. Cornish329
1999Chemical Ligation of Folded Recombinant Proteins: Segmental Isotopic Labeling of Domains for NMR StudiesTom Muir329
2013Novel Experiments on Freeform Waveguides and Isotropic Photonic Bandgaps in Hyperuniform Disordered SystemsSalvatore Torquato324
2009A shortcut to identifying small molecule signals that regulate behavior and development in Caenorhabditis elegansFrank C. Schroeder315
2002Exploring the folding landscape of a structured RNAXiaowei Zhuang314
2019The mucin-selective protease StcE enables molecular and functional analysis of human cancer-associated mucinsStacy Malaker313
2017Human SHMT inhibitors reveal defective glycine import as a targetable metabolic vulnerability of diffuse large B-cell lymphomaJoshua Rabinowitz303
2000Combinatorial Target-Guided Ligand Assembly. Identification of Potent, Sub-type Selective c-Src InhibitorsJon Ellman303
2009Substrate positioning controls the partition between halogenation and hydroxylation in the aliphatic halogenase, SyrB2.Megan L. Matthews · Squire J. Booker291
2018Stable iridium dinuclear heterogeneous catalysts supported on metal-oxide substrate for solar water oxidationGary Brudvig290
1999Detoxification of environmental mutagens and carcinogens: structure, mechanism, and evolution of liver epoxide hydrolaseDavid W. Christianson288
2016Nitrosomonas europaea Cytochrome P460 Is a Direct Link between Nitrification and Nitrous Oxide EmissionKyle M. Lancaster279
2007Grass roots chemistry: meta-tyrosine, an herbicidal nonprotein amino acidFrank C. Schroeder278
2012Collective Many-Body van der Waals Interactions in Molecular SystemsRobert A. DiStasio Jr.276
2003Single-molecule transition-state analysis of RNA foldingXiaowei Zhuang274
2000Fluorescence quenching: a tool for single-molecule protein-folding studyXiaowei Zhuang272
2012Amorfrutins are potent antidiabetic dietary natural productsFrank C. Schroeder271
2004A tautomeric zinc sensor for ratiometric fluorescence imaging: Application to nitric oxide-induced release of intracellular zincChristopher J. Chang268
2006Generic Hydrophobic Residues are Sufficient to Promote Aggregation of the Alzheimer’s Ab42 PeptideMichael Hecht265
2017Characterization of NiFe oxyhydroxide electrocatalysts by integrated electronic structure calculations and spectroelectrochemistrySharon Hammes-Schiffer264
1986Mechanism for photosynthetic O2 evolution.Gary Brudvig264
2012Kinetic and structural studies, origins of selectivity, and interfacial charge transfer in the artificial photosynthesis of COJames Mayer260
2019Accurate Molecular Polarizabilities with Coupled-Cluster Theory and Machine LearningRobert A. DiStasio Jr.255
2020Lactate dehydrogenase inhibition synergizes with IL-21 to promote CD8+ T cell stemness and antitumor immunityJoshua Rabinowitz254
2008Epsin1 is a cargo specific adaptor for the clathrin-mediated endocytosis of influenza virusXiaowei Zhuang252
1998How evolution makes proteins fold quicklyEugene I. Shakhnovich250
1998Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNADavid W. Christianson248
2012Near-infrared fluorescent sensor for in vivo copper imaging in a murine Wilson disease modelChristopher J. Chang244
1994Site-Specific Incorporation of Biophysical Probes into ProteinsVirginia W. Cornish242
2003Kinks, Rings, and Rackets in Filamentous StructuresAdam Cohen240
2011A biophysical protein folding model accounts for most mutational fitness effects in virusesEugene I. Shakhnovich240
2017Identification of individuals by trait prediction using whole-genome sequencing dataChristopher J. Chang240
2005Crystal structure of human arginase I at 1.29-Å resolution and exploration of inhibition in the immune responseDavid W. Christianson237
2006Identification of a starter unit acyl-carrier protein transacylase domain in an iterative type I polyketide synthaseJason M. Crawford236
2018New Molecular Switch ArchitecturesIvan Aprahamian235
2016Prevalent presence of periodic actin-spectrin-based membrane skeleton in a broad range of neuronal cell types and animal speciesXiaowei Zhuang233
2014Role of pendant proton relays and proton-coupled electron transfer on the hydrogen evolution reaction by nickel hangman porphyrinsSharon Hammes-Schiffer233
2011Calcium-dependent copper redistributions in neuronal cells revealed by a fluorescent copper sensor and X-ray fluorescence microscopyChristopher J. Chang231
2012Small molecule perimeter defense in entomopathogenic bacteriaJason M. Crawford231
2002Expanding protein universe and its origin from the biological Big BangEugene I. Shakhnovich230
2016In vivo bioluminescence imaging reveals copper deficiency in a murine model of nonalcoholic fatty liver diseaseChristopher J. Chang227
2007Mechanisms of Photoswitch Conjugation and Light Activation of an Ionotropic Glutamate ReceptorDirk Trauner226
2002Rationally Designed Mutations Convert De Novo Amyloid-Like Fibrils into Soluble Monomeric b-Sheet ProteinsMichael Hecht224
2017Unusual zinc-binding mode of HDAC6-selective hydroxamate inhibitorsDavid W. Christianson210
1984Effect of Single Amino Acid Replacements on the Thermal Stability of the Amino Terminal Domain of Phage l-RepressorMichael Hecht210
2020Signatures of a liquid–liquid transition in an ab initio deep neural network model for waterRoberto Car210
2002The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulationEugene I. Shakhnovich208
2004Semisynthesis of a Segmental Isotopically Labeled Protein Splicing Precursor: NMR Evidence for an Unusual Peptide Bond at the N-Extein-Intein Junction.Tom Muir208
2003Crystal structure of LpxC, a zinc-dependent deacetylase essential for endotoxin biosynthesisDavid W. Christianson205
2001Length-Dependent Stability and Strand Length Limits in Antiparallel -Sheet Secondary Structure.Tom Muir205
2006On the origin and highly likely completeness of single-domain protein structuresEugene I. Shakhnovich204
1996Crystal structure of the secretory form of membrane-associated human carbonic anhydrase IV at 2.8-Å resolutionDavid W. Christianson203
2016Nickel phlorin intermediate formed by proton-coupled electron transfer in hydrogen evolution mechanismSharon Hammes-Schiffer200
2003Counterion Switch in the Photoactivation of G Protein-Coupled Receptor RhodopsinE. Chui-Ying Yan198
2009Allosteric modulation of DNA by small moleculesDavid M. Chenoweth197
1983Mutations in l-Repressor's Amino-Terminal Domain: Implications for Protein Stability and DNA BindingMichael Hecht197
2003Programming Peptidomimetic Syntheses by Translating Genetic Codes Designed De NovoVirginia W. Cornish195
2019A glycyl radical enzyme enables hydrogen sulfide production by the human intestinal bacterium Bilophila wadsworthia.Emily Balskus195
2010Visualizing enveloping layer glycans during zebrafish early embryogenesisJeremy M. Baskin194
2004Single-molecule enzymology of RNA: Essential functional groups impact catalysis from a distanceXiaowei Zhuang194
2011Electrokinetic trapping at the one nanometer limitAdam Cohen193
2014Wireless gas detection with a smartphone via rf communicationKatherine A. Mirica192
2013Rapid prototyping of carbon-based chemiresistive gas sensors on paperKatherine A. Mirica192
2019Volumetric chemical imaging by clearing-enhanced stimulated Raman scattering microscopyLaura J. Kaufman191
2005Impact of distal mutations on the network of coupled motions correlated to hydride transfer in dihydrofolate reductaseSharon Hammes-Schiffer191
2017Structural Organization of the Actin-spectrin-based Membrane Skeleton in Dendrites and Soma of NeuronsXiaowei Zhuang190
2010Dynamic sorting of lipids and proteins in membrane tubes with a moving phase boundaryTobias Baumgart190
2004Visualization of plasma membrane compartmentalization with patterned lipid bilayersBarbara A. Baird188
2003Optimal alignment for enzymatic proton transfer: structure of the Michaelis complex of triosephosphate isomerase at 1.2-Å resolutionAnn E. McDermott186
2019Revealing the atomic ordering of binary intermetallics using in situ heating techniques at multilength scalesYao Yang184
2022Reliably assessing the electronic structure of cytochrome P450 on today’s classical computers and tomorrow’s quantum computersJoonho Lee183
2008Conformational changes of calmodulin upon Ca2+ binding studied with a microfluidic mixerElizabeth Rhoades182
2014Copper is an endogenous modulator of neural circuit spontaneous activityChristopher J. Chang181
2013Mechanism of voltage-sensitive fluorescence in a microbial rhodopsinAdam Cohen178
2013H3R42me2a is a histone modification with positive transcriptional effectsTom Muir178
2006Packing, Tiling and Covering with TetrahedraSalvatore Torquato178
2010Structure of Vibrio cholerae ToxT reveals a mechanism for fatty acid regulation of virulence genes.F. Jon Kull176
1995Evolution-like selection of fast-folding model proteins.Eugene I. Shakhnovich176
2021Genome-wide CRISPR screens reveal a specific ligand for glycan-binding immune checkpoint receptor Siglec-7Stacy Malaker175
2009Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translationRuben L Gonzalez Jr174
2020Probing and manipulating embryogenesis via nanoscale thermometry and temperature controlHongkun Park174
2007Dietary sequestration of defensive steroids in nuchal glands of the Asian snake Rhabdophis tigrinusFrank C. Schroeder171
2017A Promiscuous Split Intein with Expanded Protein Engineering ApplicationsNeel H. Shah · Tom Muir170
2016Biophysical principles predict fitness landscapes of drug resistanceEugene I. Shakhnovich167
2009Traceless Protein Ligation Using Evolved Split InteinsTom Muir167
2013A HORMA domain in Atg13 mediates PI 3-kinase recruitment in autophagyMichael J. Ragusa165
2006Chemoresponsive monolayer transistorsColin P. Nuckolls165
2004Direct Experimental Observation of the Low Ionization Potentials of Guanine in Free Oligonucleotides Using Photoelectron SpectroscopyLai-Sheng Wang164
2011Islet amyloid polypeptide demonstrates a persistent capacity to disrupt membrane integrityElizabeth Rhoades162
2019Structural maturation of cortical perineuronal nets and their perforating synapses revealed by super-resolution imagingXiaowei Zhuang161
2014A model for the generation and interconversion of ER morphologiesXiaowei Zhuang161
1999Evidence for the role of PrPC helix 1 in the hydrophilic seeding of prion aggregatesEugene I. Shakhnovich161
2003Solution Structure of a De Novo Protein from a Designed Combinatorial LibraryMichael Hecht160
1986X-ray crystallographic investigation of substrate binding to carboxypeptidase A at subzero temperature.David W. Christianson157
2012Interaction of structure-specific and promiscuous G-protein–coupled receptors mediates small-molecule signaling in Caenorhabditis elegansFrank C. Schroeder155
2008Probing concerted proton–electron transfer in phenol–imidazolesJames Mayer155
2002Autoregulation of a Bacterial Sigma Factor Explored Using Segmental Labeling and NMRTom Muir154
2018HELLS and CDCA7 comprise a bipartitie nucleosome remodeling complex defective in ICF syndromeTom Muir154
2013X-ray structure of an AdoMet radical activase reveals an anaerobic solution for formylglycine posttranslational modificationSquire J. Booker152
2000Emergent mechanical properties of self-assembled polymeric capsulesColin P. Nuckolls151
2019Imaging-based pooled CRISPR screening reveals regulators of lncRNA localizationXiaowei Zhuang150
2020Cavity Molecular Dynamics Simulations of Liquid Water under Vibrational Ultrastrong CouplingAbraham Nitzan · Joseph Subotnik149
1995Structure determination of murine mitochondrial carbonic anhydrase V at 2.45-A resolution: implications for catalytic proton transfer and inhibitor design.David W. Christianson149
2020An Enzymatic Toolkit for Selective Proteolysis, Detection, and Visualization of Mucin-Domain GlycoproteinsStacy Malaker147
1979Structure of cytochrome a3-Cua3 couple in cytochrome c oxidase as revealed by nitric oxide binding studies.Gary Brudvig147
2010Predicting organic hydrogen atom transfer rate constants using the Marcus cross relationJames Mayer146
2012Ultrafast photodriven intramolecular electron transfer from an iridium-based water-oxidation catalyst to perylene diimide derivativesGary Brudvig143
2010Structure and function of an iterative polyketide synthase thioesterase domain catalyzing Claisen cyclization in aflatoxin biosynthesisJason M. Crawford143
2010Artificial atoms on semiconductor surfacesXiaoyang Zhu139
2022High-resolution cryo-electron microscopy structure of photosystem II from the mesophilic cyanobacterium, Synechocystis sp. PCC 6803Gary Brudvig139
2006A simple physical model for scaling in protein-protein interaction networksEugene I. Shakhnovich137
2016Crystallographic snapshots of sulfur insertion by lipoyl synthaseSquire J. Booker135
2018Observation of Highly Stable and Symmetric Lanthanide Octa-Boron Inverse Sandwich ClustersLai-Sheng Wang134
2015Purinosome formation as a function of the cell cycleXiaowei Zhuang134
2015Rational design of self-assembly pathways for complex multicomponent structuresWilliam M. Jacobs134
2001Self-Assembled Monolayers from a Designed Combinatorial Library of De Novo b-sheet ProteinsMichael Hecht133
1996Mapping protein-protein interactions by affinity-directed mass spectrometry.Tom Muir132
2001Probing the open state of cytochrome P450cam with ruthenium-linker substratesIvan J. Dmochowski131
2010Multicatalytic, Asymmetric Michael/Stetter Reaction of Salicylaldehydes and Activated AlkynesTomislav Rovis130
2014A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocationRuben L Gonzalez Jr130
2001Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulationsEugene I. Shakhnovich130
2004Glycine as a D-amino acid surrogate in the K+ selectivity filter.Tom Muir130
1993Cloning, sequencing, and expression of the adenosylcobalamin-dependent ribonucleotide reductase from Lactobacillus leichmannii.Squire J. Booker129
2011Reiterative Recombination for the In Vivo Assembly of Libraries of Multi-Gene PathwaysVirginia W. Cornish128
2007Small Molecule-Mediated Rescue of Protein Function by an Inducible Proteolytic ShuntTom Muir128
1994De Novo Design of b-Sheet Proteins (Commentary)Michael Hecht127
1998Sulfur K-edge x-ray absorption spectroscopy: A spectroscopic tool to examine the redox state of S-containing metabolites in vivoAnn E. McDermott126
2004Hydrophobic interactions drive ligand-receptor recognition for activation and inhibition of staphylococcal quorum sensingTom Muir126
2004A steroid modulatory domain on NR2B controls N-methyl-D-aspartate receptor proton sensitivityDale F. Mierke124
2013Pheromone sensing regulates Caenorhabditis elegans lifespan and stress resistance via the deacetylase SIR-2.1Frank C. Schroeder123
2002Combinatorial computational method gives new picomolar ligands for a known enzymeDavid W. Christianson · Eugene I. Shakhnovich123
2017Evidence of evolutionary selection for cotranslational foldingEugene I. Shakhnovich123
2017Evidence of evolutionary selection for co-translational foldingWilliam M. Jacobs123
2019The histone H3 tail binds a unique sensing pocket in EZH2 to activate the PRC2 methyltransferaseTom Muir123
2012Soluble oligomerization provides a beneficial fitness effect on destabilizing mutationsEugene I. Shakhnovich122
2013Functional significance of evolving protein sequence in dihydrofolate reductase from bacteria to humansSharon Hammes-Schiffer122
2014Existence of Isostatic, Maximally Random Jammed Monodisperse Hard-Disk PackingsSalvatore Torquato121
2003Natural selection of more designable folds: a mechanism for thermophilic adaptationEugene I. Shakhnovich119
2003Superoxo, μ-peroxo and μ-oxo complexes from heme/O2 and heme-Cu/O2 reactivity: Copper-ligand influences in cytochrome c oxidase models.Eunsuk Kim118
2019Topology on a new facet of bismuthSuyang Xu118
2007Principal Components Analysis of shape fluctuations of single DNA moleculesAdam Cohen117
2011Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactionsEugene I. Shakhnovich117
2020The alarmones (p) ppGpp directly regulate translation initiation during entry into quiescenceRuben L Gonzalez Jr116
2000Chemical defense: bestowal of a nuptial alkaloidal garment by a male moth on its mateFrank C. Schroeder116
2020Direct kinetic measurements and theoretical predictions of an isoprene-derived Criegee intermediateMarsha I. Lester · Patrick J. Walsh116
2013A high-throughput screen for quorum-sensing inhibitors that target acyl-homoserine lactone synthasesSquire J. Booker116
2006Pinoresinol: A lignol of plant origin serving for defense in a caterpillarFrank C. Schroeder115
2020Natural diversity in the predatory behavior facilitates the establishment of a robust model strain for nematode-trapping fungiFrank C. Schroeder114
2003Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinasesEugene I. Shakhnovich114
2013Hyperuniformity in Amorphous Silicon Based on the Measurement of the Infinite-Wavelength Limit of the Structure FactorSalvatore Torquato114
1987Mechanism of carboxypeptidase A: hydration of a ketonic substrate analogue.David W. Christianson113
2014Transmembrane allosteric coupling of the gates in a potassium channelAnn E. McDermott112
2015Enhancement of Radiation Effect on Cancer Cells by Gold-pHLIP (pH Low Insertion Peptide)Shouheng Sun111
2015The Ribosome Can Discriminate the Chirality of Amino Acids Within Its Peptidyl Transferase CenterRuben L Gonzalez Jr · Virginia W. Cornish111
2019Octahedral spinel electrocatalysts for alkaline fuel cellsYao Yang111
2009agr receptor mutants reveal distinct modes of inhibition by staphylococcal autoinducing peptidesTom Muir111
2007Dissecting the multi-step reaction pathway of an RNA enzyme by single-molecule kinetic fingerprintingXiaowei Zhuang110
2015Consecutive radical S-adenosylmethionine methylations form the ethyl side chain in thienamycin biosynthesisSquire J. Booker108
2017Decoupling of Surface Diffusion and Relaxation Dynamics of Molecular GlassesZahra Fakhraai107
2004A fluorophore attached to nicotinic acetylcholine receptor βM2 detects productive binding of agonist to the αδ siteE. James Petersson107
2020Metabolic precision labeling enables selective probing of O-linked N-acetylgalactosamine glycosylationStacy Malaker107
2022A completely precious metal–free alkaline fuel cell with enhanced performance using a carbon-coated nickel anodeYao Yang105
2008Conformational dynamics of an intact virus: order parameters for the coat protein of Pf1 bacteriophageAnn E. McDermott104
2021Histone H3Q5 serotonylation stabilizes H3K4 methylation and potentiates its readoutTom Muir104
2019A real-time, click chemistry imaging approach reveals stimulus-specific subcellular locations of phospholipase D activityJeremy M. Baskin103
2002Chemical Complementation: A Reaction-Independent, High-Throughput Genetic Assay for Enzyme CatalysisVirginia W. Cornish102
2012Insights into proton-coupled electron transfer mechanisms of electrocatalytic H2 oxidation and productionSharon Hammes-Schiffer102
2016Accomplishing simple, solubility-based separations of rare earth elements with complexes bearing size-sensitive molecular aperturesEric J. Schelter101
2009Nanosculpting Reversed Wavelength Sensitivity Into a Photoswitchable iGluRDirk Trauner99
2017Efficient assignment and NMR analysis of an intact virus using sequential side-chain correlations and DNP sensitizationAnn E. McDermott98
2018Microtubule-directed transport of purine metabolons drives their cytosolic transit to mitochondriaXiaowei Zhuang97
2017Dual Optical Control and Mechanistic Insights Into Photoswitchable Group II and III Metabotropic Glutamate ReceptorsDirk Trauner97
2015Ideal probe single-molecule experiments reveal the intrinsic dynamic heterogeneity of a supercooled liquidLaura J. Kaufman96
2007Dynamics of equilibrium structural fluctuations of apomyoglobin measured by fluorescence correlation spectroscopyElizabeth Rhoades96
2008NMR-spectroscopic screening of spider venom reveals sulfated nucleosides as major components for the brown recluse and related speciesFrank C. Schroeder95
2013X-ray analysis of butirosin biosynthetic enzyme BtrN redefines structural motifs for AdoMet radical chemistrySquire J. Booker95
2016A functional role for intrinsic disorder in the tau-tubulin complexElizabeth Rhoades95
2024Is Stochastic Thermodynamics the Key to Understanding the Energy Costs of Computation?Brenda Rubenstein93
2017Architecture of the human PI4KIIIα lipid kinase complexJeremy M. Baskin92
2007Robust protein–protein interactions in crowded cellular environmentsEugene I. Shakhnovich92
2024Stabilizing Ti 3 C 2 T x MXene flakes in air by removing confined waterZahra Fakhraai92
2023A genetically encoded photoproximity labeling approach for mapping protein territoriesTom Muir92
2016A [3Fe-4S] cluster is required for tRNA thiolation in archaea and eukaryotesPatrick Holland92
2012Protonation state of E71 in KcsA and its role for channel collapse and inactivationAnn E. McDermott91
2012Direct substitution and assisted dissociation pathways for turning off transcription by a MerR-family metalloregulatorPeng Chen91
2002A structure-based method for derivation of all-atom potentials for protein foldingEugene I. Shakhnovich91
2015Key driving forces in the biosynthesis of autoinducing peptides required for staphyloccal virulence.Tom Muir91
2017Ultrathin dendrimer–graphene oxide composite film for stable cycling lithium–sulfur batteriesHailiang Wang91
2012Sex-specific mating pheromones in the nematode Panagrellus redivivusFrank C. Schroeder90
2021Structure and assembly of the diiron cofactor in the heme-oxygenase-like domain of the N-nitrosourea-producing enzyme SznF.Emily Balskus90
2017Janus dendrimersomes coassembled from fluorinated, hydrogenated, and hybrid Janus dendrimers as models for cell fusion and fissionTobias Baumgart89
1997Combinatorial Thinking in Chemistry and BiologyJon Ellman89
2013Exploiting imperfections in the bulk to direct assembly of surface colloidsTobias Baumgart88
2011Measurement of radon and xenon binding to a cryptophane molecular hostIvan J. Dmochowski87
2014Escherichia coli dihydrofolate reductase catalyzed proton and hydride transfers: Temporal order and the roles of Asp27 and Tyr100Sharon Hammes-Schiffer87
2014Assembly and dynamics of the autophagy-initiating Atg1 complexMichael J. Ragusa86
1974Threshold excitations, relaxation oscillations and effect of noise on an enzyme reactionAbraham Nitzan84
2014Tau mutants bind tubulin heterodimers with enhanced affinityElizabeth Rhoades84
2015Protein synthesis during cellular quiescence is inhibited by phosphorylation of a translational elongation factorRuben L Gonzalez Jr83
1990Stark spectroscopy of the Rhodobacter sphaeroides reaction center heterodimer mutantSharon Hammes-Schiffer83
2016Repression of p63 and induction of EMT by mutant Ras in mammary epithelial cellsLaura J. Kaufman80
1999Optical detection of cytochrome P450 by sensitizer-linked substratesIvan J. Dmochowski80
2010Protein–ice interaction of an antifreeze protein observed with solid-state NMRAnn E. McDermott79
2022Self-assembly of photonic crystals by controlling the nucleation and growth of DNA-coated colloidsWilliam M. Jacobs79
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2021Prednisolone rescues Duchenne Muscular Dystrophy phenotypes in human pluripotent stem cells-derived skeletal muscle in vitroAdam Cohen78
2020Multifunctional Composites for Elastic and Electromagnetic Wave PropagationSalvatore Torquato78
2001Activated Cdc42/Rac reconstitutes FcRI-mediated Ca2+ mobilization and degranulation in mutant RBL mast cellsBarbara A. Baird77
2018Conformational changes in Arp2/3 complex induced by ATP, WASp-VCA, and actin filamentsElizabeth Rhoades77
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2018Metal-free class Ie ribonucleotide reductase from pathogens initiates catalysis with a tyrosine-derived dihydroxyphenylalanine radicalMegan L. Matthews76
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2020Live-cell protein engineering with an ultra-short split inteinTom Muir75
2019βII-spectrin promotes mouse brain connectivity through stabilizing axonal plasma membranes and enabling axonal organelle transportXiaowei Zhuang74
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2019Encoding biological recognition in a bicomponent cell-membrane mimicTobias Baumgart72
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2017Stratospheric ozone over the United States in summer linked to observations of convection and temperature via chlorine and bromine catalysisJames G. Anderson71
2004Catalytic Asymmetric Addition of Diphenylzinc to Cyclic ···-Unsaturated KetonesPatrick J. Walsh71
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2016Contrasting responses within a single neuron class enable sex-specific attraction in Caenorhabditis elegansFrank C. Schroeder69
2005Crystal structure of the GTPase domain of rat dynamin 1.F. Jon Kull68
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The 300 most cited of 424 works; the other 124 are not listed. Citations as counted, before any journal weight: 398 of these 424 works carry a count, and a work with no count is unknown, never a zero.